Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0379
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13811| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.080
SB_5710| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.080
SB_43685| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.080
SB_14847| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.080
SB_13118| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.080
SB_8249| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.080
SB_3620| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.080

>SB_13811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 20/42 (47%), Positives = 21/42 (50%)
 Frame = -3

Query: 656 NKCPAIMLAVNRTAKVPGRIIFLMVSIITINGIKI*GVPCGI 531
           NKCPA  LA  RT K       L VSI T  G +  G P GI
Sbjct: 23  NKCPADKLAAKRTPKETALKTKLAVSINTKRGARARGAPAGI 64


>SB_5710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 20/42 (47%), Positives = 21/42 (50%)
 Frame = -3

Query: 656 NKCPAIMLAVNRTAKVPGRIIFLMVSIITINGIKI*GVPCGI 531
           NKCPA  LA  RT K       L VSI T  G +  G P GI
Sbjct: 23  NKCPADKLAAKRTPKETALKTKLAVSINTKRGARARGAPAGI 64


>SB_43685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 20/42 (47%), Positives = 21/42 (50%)
 Frame = -3

Query: 656 NKCPAIMLAVNRTAKVPGRIIFLMVSIITINGIKI*GVPCGI 531
           NKCPA  LA  RT K       L VSI T  G +  G P GI
Sbjct: 85  NKCPADKLAAKRTPKETALKTKLAVSINTKRGARARGAPAGI 126


>SB_14847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 20/42 (47%), Positives = 21/42 (50%)
 Frame = -3

Query: 656 NKCPAIMLAVNRTAKVPGRIIFLMVSIITINGIKI*GVPCGI 531
           NKCPA  LA  RT K       L VSI T  G +  G P GI
Sbjct: 23  NKCPADKLAAKRTPKETALKTKLAVSINTKRGARARGAPAGI 64


>SB_13118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 20/42 (47%), Positives = 21/42 (50%)
 Frame = -3

Query: 656 NKCPAIMLAVNRTAKVPGRIIFLMVSIITINGIKI*GVPCGI 531
           NKCPA  LA  RT K       L VSI T  G +  G P GI
Sbjct: 23  NKCPADKLAAKRTPKETALKTKLAVSINTKRGARARGAPAGI 64


>SB_8249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 20/42 (47%), Positives = 21/42 (50%)
 Frame = -3

Query: 656 NKCPAIMLAVNRTAKVPGRIIFLMVSIITINGIKI*GVPCGI 531
           NKCPA  LA  RT K       L VSI T  G +  G P GI
Sbjct: 23  NKCPADKLAAKRTPKETALKTKLAVSINTKRGARARGAPAGI 64


>SB_3620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 20/42 (47%), Positives = 21/42 (50%)
 Frame = -3

Query: 656 NKCPAIMLAVNRTAKVPGRIIFLMVSIITINGIKI*GVPCGI 531
           NKCPA  LA  RT K       L VSI T  G +  G P GI
Sbjct: 23  NKCPADKLAAKRTPKETALKTKLAVSINTKRGARARGAPAGI 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,878,006
Number of Sequences: 59808
Number of extensions: 184385
Number of successful extensions: 320
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)