Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0378
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    26   0.42 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   5.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.1  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   6.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   6.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.8  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   9.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.0  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 464 HDLSFYKPFYLQLQMLPCQSLPDLASHLAFSGSTSLIVREGIFGFCICAVVDENGTKATS 285
           H LS  + F +  ++L  ++L   + H        ++   G  G C  +V+DENG +  +
Sbjct: 277 HPLSSRREFAVSTRILRDENLSQNSYH-----EFQILPERGELGHCTASVMDENGLQFFN 331

Query: 284 L 282
           L
Sbjct: 332 L 332


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 658 YM*KNANSNTRKYNGKNYTGY 720
           Y   N N+N   YN  NY  Y
Sbjct: 329 YNNNNYNNNYNNYNNNNYNNY 349


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 670 NANSNTRKYNGKNYTGY 720
           N N N   YN  NY  Y
Sbjct: 98  NNNYNNYNYNNNNYNNY 114


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 305 NGTKATSLDGPLNGRSKILRFSVPNK 228
           + TK+  L+GP NG+ K    ++ N+
Sbjct: 201 SSTKSYVLEGPRNGKRKRKSSTIENE 226


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 424 KCSPANLSQILQVISH 377
           +CSP    QI +V+SH
Sbjct: 82  QCSPEETRQIKKVLSH 97


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 424 KCSPANLSQILQVISH 377
           +CSP    QI +V+SH
Sbjct: 82  QCSPEETRQIKKVLSH 97


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 129 CRNNYCRMSKNGELSSN 179
           C + YC + K  ELS N
Sbjct: 82  CASKYCGIGKECELSPN 98


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 341 IFGFCIC 321
           IFGFC+C
Sbjct: 7   IFGFCVC 13


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 670 NANSNTRKYNGKNY 711
           N N+N  KYN  NY
Sbjct: 323 NYNNNNYKYNYNNY 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,843
Number of Sequences: 438
Number of extensions: 4390
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)