Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0376
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   3.0  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   3.0  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   3.0  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   3.0  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   3.0  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    23   3.0  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   3.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.0  
AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan oxyge...    22   5.3  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   5.3  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   5.3  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   6.9  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   6.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   9.2  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 393 LSRRSFLPYHTFPYRLPFQ 449
           ++  + +PYH  PY  P+Q
Sbjct: 281 MASMNIVPYHMSPYGHPYQ 299


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 393 LSRRSFLPYHTFPYRLPFQ 449
           ++  + +PYH  PY  P+Q
Sbjct: 281 MASMNIVPYHMSPYGHPYQ 299


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 393 LSRRSFLPYHTFPYRLPFQ 449
           ++  + +PYH  PY  P+Q
Sbjct: 281 MASMNIVPYHMSPYGHPYQ 299


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 393 LSRRSFLPYHTFPYRLPFQ 449
           ++  + +PYH  PY  P+Q
Sbjct: 237 MASMNIVPYHMSPYGHPYQ 255


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 393 LSRRSFLPYHTFPYRLPFQ 449
           ++  + +PYH  PY  P+Q
Sbjct: 281 MASMNIVPYHMSPYGHPYQ 299


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 393 LSRRSFLPYHTFPYRLPFQ 449
           ++  + +PYH  PY  P+Q
Sbjct: 69  MASMNIVPYHMSPYGHPYQ 87


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 393 LSRRSFLPYHTFPYRLPFQ 449
           ++  + +PYH  PY  P+Q
Sbjct: 281 MASMNIVPYHMSPYGHPYQ 299


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 303  QGSTSTMFGRPTR*RSVPLASHNYGP 380
            QGS+S+  G P +  +VP  S + GP
Sbjct: 1095 QGSSSSSEGVPLKGTAVPPPSGSSGP 1120


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 538 WSPALTISKVLLSICSLLCDPNPDDPLV 621
           WSPA T +            P P DP V
Sbjct: 108 WSPAATAAATATEYKYSAAAPGPSDPSV 135


>AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 76

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 449 NHQKLHSQHVFII 487
           N+Q +H +H+FI+
Sbjct: 44  NNQPVHDEHLFIV 56


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 449 NHQKLHSQHVFII 487
           N+Q +H +H+FI+
Sbjct: 44  NNQPVHDEHLFIV 56


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 449 NHQKLHSQHVFII 487
           N+Q +H +H+FI+
Sbjct: 44  NNQPVHDEHLFIV 56


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 157 LRLDREPSCNL*SKVLGSQFRC 222
           L+ ++E  C L SKV+G +  C
Sbjct: 21  LKGNQEDPCKLKSKVVGDETYC 42


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 176 HLAISNQRSLAHSFVV*LKVSITQHKIVKWR*KELIGNYKI 298
           HLA+ N   +  +FV  L + I    +VK   K L+  Y++
Sbjct: 251 HLAVLNILRVGKNFVCLLSLIILCDCVVKEAQKSLVLTYEM 291


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 193 IRDCKMAPCLN 161
           I DCK+ PC N
Sbjct: 69  INDCKVNPCEN 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,940
Number of Sequences: 336
Number of extensions: 4235
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)