Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0376
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 266 2e-72
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 138 5e-34
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 134 1e-32
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 130 2e-31
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 129 3e-31
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 115 7e-27
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 114 1e-26
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 113 3e-26
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 107 2e-24
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 103 2e-23
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 84 2e-17
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 83 3e-17
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 77 3e-15
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 51 1e-07
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 28 1.4
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 1.9
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 3.3
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 4.3
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 4.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.5
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 25 7.5
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 9.9
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 266 bits (652), Expect = 2e-72
Identities = 118/134 (88%), Positives = 124/134 (92%)
Frame = +1
Query: 262 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 441
MALKRINREL DLG+DPP+ CSAGP G+DLFHWQATIMGP DSPY GGVFFL+IHFPTDY
Sbjct: 1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 442 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLV 621
PFKPPKV FTTRIYHPNINSNGSICLDILR QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLV 120
Query: 622 PEIARIYKTDREKY 663
PEIA +YKTDR +Y
Sbjct: 121 PEIAHVYKTDRSRY 134
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 138 bits (335), Expect = 5e-34
Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 1/140 (0%)
Frame = +1
Query: 256 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 435
S + +R+ +E DL P ++LFHW T +GP DS Y GG F ++ FP
Sbjct: 5 SPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPL 64
Query: 436 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ-WSPALTISKVLLSICSLLCDPNPDD 612
DYPF+PP + FTTRIYHPN +S G++CL IL+ Q + P++ + VL I LL +PNPDD
Sbjct: 65 DYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDD 124
Query: 613 PLVPEIARIYKTDREKYNEL 672
PLV IA Y+ DR ++++
Sbjct: 125 PLVASIAEQYRNDRPSFDKI 144
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 134 bits (323), Expect = 1e-32
Identities = 64/129 (49%), Positives = 86/129 (66%), Gaps = 1/129 (0%)
Frame = +1
Query: 262 MAL-KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 438
MAL KRI +E++ L RDPP A P ++L +++ T+ GP S Y+GG F L + P +
Sbjct: 1 MALPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDE 60
Query: 439 YPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPL 618
YP PP V F T+IYHPN++ G ICL L+ WSPAL I VLLSI +L+ PNPDDPL
Sbjct: 61 YPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPL 120
Query: 619 VPEIARIYK 645
++A+I+K
Sbjct: 121 DNDVAKIWK 129
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 130 bits (314), Expect = 2e-31
Identities = 56/132 (42%), Positives = 85/132 (64%), Gaps = 1/132 (0%)
Frame = +1
Query: 271 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 450
+RI +EL D+ +D A +D+ H + GP +PY+GG F + I P DYPF+
Sbjct: 7 RRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFR 66
Query: 451 PPKVAFTTRIYHPNINS-NGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPE 627
PPK+ F T+IYHPN++S G+ICLDIL+ QWSP T+ L+S+ SLLC P P +P +
Sbjct: 67 PPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQ 126
Query: 628 IARIYKTDREKY 663
+A++Y + +++
Sbjct: 127 VAQVYLQNYQQF 138
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 129 bits (312), Expect = 3e-31
Identities = 55/136 (40%), Positives = 88/136 (64%)
Frame = +1
Query: 256 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 435
S A +R+ R+ + + +DPPA SA P +++ W A I+GP D+P++ G F L + F
Sbjct: 2 STTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDE 61
Query: 436 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDP 615
YP KPP V F + ++HPN+ +NG +CLDIL+ +WSP ++ +L SI SLL DPN P
Sbjct: 62 QYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASP 121
Query: 616 LVPEIARIYKTDREKY 663
E A++++ ++++Y
Sbjct: 122 ANAEAAQLHRENKKEY 137
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 115 bits (276), Expect = 7e-27
Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Frame = +1
Query: 271 KRINRELQDLGRDPPAQCSAGPHGE-DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPF 447
KR+ EL L SA P + +L HW TI GP D+ Y+G F +++ FP +YP+
Sbjct: 31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPY 90
Query: 448 KPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPE 627
PP + FT+ ++HPN++ +G+ICLDIL+ +WS + +LLS+ SLL +PN PL +
Sbjct: 91 SPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQ 150
Query: 628 IARIYKTDREKYNEL 672
A ++ D +Y L
Sbjct: 151 AAELWSKDPIEYKRL 165
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 114 bits (274), Expect = 1e-26
Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 14/148 (9%)
Frame = +1
Query: 262 MALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDSPYQGGVFFLTIHFPTD 438
MAL+R+ +E ++L + P +AGP ED F W I GP +P++GG++ T+ FP+D
Sbjct: 5 MALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSD 64
Query: 439 YPFKPPKVAFTTRIYHPNINSNGSICLDILRA-------------QWSPALTISKVLLSI 579
YP PP + F +HPN+ +G++C+ IL A +WSP ++ K+LLS+
Sbjct: 65 YPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSV 124
Query: 580 CSLLCDPNPDDPLVPEIARIYKTDREKY 663
S+L +PN + + ++++ DRE+Y
Sbjct: 125 MSMLAEPNDESGANIDACKMWREDREEY 152
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 113 bits (271), Expect = 3e-26
Identities = 50/111 (45%), Positives = 72/111 (64%), Gaps = 2/111 (1%)
Frame = +1
Query: 346 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLD 522
D+FHW+A I GP ++PY+GG + L IH YP PP V F T+I HPNI+ +NG +C+D
Sbjct: 33 DMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMD 92
Query: 523 ILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DREKYNEL 672
IL+ WSPA ++ L+I SLL + + PL + A++ +T D+ YN L
Sbjct: 93 ILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSL 143
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 107 bits (256), Expect = 2e-24
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 7/145 (4%)
Frame = +1
Query: 256 SQMALKRINRELQDLGRDPP-----AQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLT 420
S + R+ E + RD P C + G DL +W+ I G + ++GG++ LT
Sbjct: 2 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 61
Query: 421 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ--WSPALTISKVLLSICSLLC 594
+ FP +YP +PPK FT ++HPN+ +G++CL IL + W PA+TI ++LL I LL
Sbjct: 62 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLD 121
Query: 595 DPNPDDPLVPEIARIYKTDREKYNE 669
DPN P E ++K D+ +Y +
Sbjct: 122 DPNIASPAQTEAYTMFKKDKVEYEK 146
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 103 bits (248), Expect = 2e-23
Identities = 46/145 (31%), Positives = 83/145 (57%), Gaps = 14/145 (9%)
Frame = +1
Query: 277 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP 453
+ ++L+++ ++PP S G + +F W+ I+GP D+ Y+GG F T+ FP DYP P
Sbjct: 10 LRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMP 69
Query: 454 PKVAFTTRIYHPNINSNGSICLDILR-------------AQWSPALTISKVLLSICSLLC 594
PK+ FTT I+HPN++ NG +C+ IL +W P + +L+S+ S+L
Sbjct: 70 PKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLS 129
Query: 595 DPNPDDPLVPEIARIYKTDREKYNE 669
PN + P + A+ ++ + +++ +
Sbjct: 130 SPNDESPANIDAAKEFRENPQEFKK 154
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 84.2 bits (199), Expect = 2e-17
Identities = 36/85 (42%), Positives = 51/85 (60%)
Frame = +1
Query: 379 PVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTI 558
P + Y+GG F I +YP PPKV +IYHPNI+ G++CL+ILR W+P L +
Sbjct: 60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNL 119
Query: 559 SKVLLSICSLLCDPNPDDPLVPEIA 633
+ +L+ + L PN +DPL E A
Sbjct: 120 NSILVGLQFLFLSPNAEDPLNKEAA 144
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 83.4 bits (197), Expect = 3e-17
Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Frame = +1
Query: 376 GPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRAQWSPAL 552
GP ++PY GG++ + + P++YP+K P + F RI+HPNI+ +GS+CLD++ WSP
Sbjct: 38 GPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMF 97
Query: 553 TISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKY 663
+ + + + LL PN DPL E A + + Y
Sbjct: 98 DMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTY 135
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 76.6 bits (180), Expect = 3e-15
Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Frame = +1
Query: 256 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 435
S+ A KR+ +E L ++P A P E++ W I GP D+PY+GG + T+ FP
Sbjct: 3 SKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPP 62
Query: 436 DYPFKPPKVAFTTRIYHPNINSNGSICL---DILRAQWSPALTISKVLLSICSLL-CDPN 603
DYPFKPP + T +N +CL D W+P+ +S +L+ + S + D
Sbjct: 63 DYPFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEI 120
Query: 604 PDDPLV--PEIARIYKTDREKYN 666
+V R Y D +++N
Sbjct: 121 TTGGIVTSESTRRTYAKDTKRFN 143
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 51.2 bits (117), Expect = 1e-07
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Frame = +1
Query: 316 AQCSAGPHGED---LFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 486
+ CS G D L W ATI+GP S ++ ++ L IH +YP PP V F +RI
Sbjct: 24 SSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINL 83
Query: 487 PNIN-SNGSI---CLDILRAQWSPALTISKVLLSI 579
P ++ G + +D LR W ++ VLL +
Sbjct: 84 PGVDGETGKVNPHKIDCLR-HWKREYSMETVLLDL 117
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 253 NSQMALKRINRELQDLGRDPPAQCSAG---PHGEDLFHWQATIMGPVDSPYQGGVF 411
+S A K I+ + Q+ + A AG P G + W AT M P+ +P GG F
Sbjct: 246 SSSAAAKNISEDAQNRMTNATASIMAGSALPSGGKKYSWMATDMTPM-TPAVGGGF 300
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +1
Query: 544 PALTISKVLLSICSLLCDPNPDD---PLVPEIARIYKTD 651
PA++I LL++ + NP D P+V +I RI+K+D
Sbjct: 344 PAVSIDGTLLNVGDWVLIRNPADSSKPIVSQIYRIWKSD 382
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +2
Query: 317 HNVRQAHTVKIC---SIGKPQLWAQLTVLIKEEFSSLPYISLQTTLSNHQ 457
H V +T C ++ P LWA L + F Y L+T N+Q
Sbjct: 406 HTVFSGYTTVWCPQNAVFVPGLWANLATRYRASFMLTDYAGLKTIAYNYQ 455
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 433 TDYPFKPPKVAFTTRIYHPNINSN 504
TD FKP + T +++P+I +N
Sbjct: 113 TDKKFKPNDTSITANVFNPSIQNN 136
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 538 WSPALTISKVLLSICSLLCDPNPDDPLVPEI 630
+SPA I KVL + L DPN + P++P+I
Sbjct: 291 FSPAPFIQKVLSRL--LPSDPNVEMPMIPQI 319
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 141 DFGGTFAFRQGAILQSLIKGPWL 209
D G+ +FR+G ++++L G W+
Sbjct: 943 DDNGSLSFREGVLVEALRNGYWI 965
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 331 GPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY 483
G HG LF M P PY+G T H + ++ + TT Y
Sbjct: 146 GYHGNTLFALSVGGMKPRKQPYEGVFSHTTSHVSPCFEYRYKENGETTEEY 196
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 340 RVGLPNIVLVDPCPDL 293
RV L +IV ++PCPD+
Sbjct: 113 RVRLGDIVTINPCPDI 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,215
Number of Sequences: 5004
Number of extensions: 65373
Number of successful extensions: 182
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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