Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0376
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 162 2e-40
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 110 9e-25
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 106 2e-23
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 104 6e-23
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 91 6e-19
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 85 6e-17
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 9e-17
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 83 3e-16
SB_47222| Best HMM Match : UQ_con (HMM E-Value=5) 75 5e-14
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 7e-10
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18) 58 6e-09
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15) 58 9e-09
SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24) 48 5e-06
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017) 45 5e-05
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8) 41 8e-04
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 40 0.002
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 40 0.002
SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 30 2.0
SB_40772| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_38537| Best HMM Match : VWA (HMM E-Value=0) 29 2.6
SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29) 29 2.6
SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15) 29 3.4
SB_47019| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16) 29 4.5
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_33210| Best HMM Match : Spectrin (HMM E-Value=1.3e-12) 28 7.9
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 28 7.9
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 162 bits (394), Expect = 2e-40
Identities = 79/138 (57%), Positives = 94/138 (68%)
Frame = +1
Query: 253 NSQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFP 432
N A KRI REL ++ DPP CSAGP G+DL+ W +TI+GP S Y+GGVFFL IHFP
Sbjct: 92 NQSTAAKRIQRELTEITLDPPPNCSAGPKGDDLYEWYSTILGPPGSVYEGGVFFLDIHFP 151
Query: 433 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDD 612
+DYPFKPPK G +CLDIL+ WSPALTISKVLLSICSLL D NP D
Sbjct: 152 SDYPFKPPK---------------GMVCLDILKDSWSPALTISKVLLSICSLLTDCNPAD 196
Query: 613 PLVPEIARIYKTDREKYN 666
PLV IA +Y +R +++
Sbjct: 197 PLVGSIAALYVQNRSEHD 214
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 110 bits (265), Expect = 9e-25
Identities = 51/104 (49%), Positives = 69/104 (66%), Gaps = 4/104 (3%)
Frame = +1
Query: 370 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RAQ 537
++G +PY G+F L I P YPF+PPKV F T IYHPNI+S+G ICLD L +
Sbjct: 2 LIGAEGTPYHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGM 61
Query: 538 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNE 669
W PAL IS VL +I L+ +PNPDDPL+ EI+ +K ++ ++ E
Sbjct: 62 WKPALNISSVLSTILILMAEPNPDDPLMAEISNEFKYNKAQFLE 105
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 106 bits (254), Expect = 2e-23
Identities = 44/69 (63%), Positives = 52/69 (75%)
Frame = +1
Query: 253 NSQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFP 432
N A KRI REL ++ DPP CSAGP G+DL+ W +TI+GP S Y+GGVFFL IHFP
Sbjct: 132 NQSTAAKRIQRELTEITLDPPPNCSAGPKGDDLYEWYSTILGPPGSVYEGGVFFLDIHFP 191
Query: 433 TDYPFKPPK 459
+DYPFKPPK
Sbjct: 192 SDYPFKPPK 200
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 104 bits (250), Expect = 6e-23
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Frame = +1
Query: 346 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 525
++ +WQ I+ P PY G F + I FP +YPFKPPK+ F T+IYHPNI+ G +CL I
Sbjct: 22 NILYWQGLIV-PEMPPYNKGAFRIEICFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPI 80
Query: 526 LRAQ-WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKY 663
+ + W PA +V+ ++ +L+ DP P+ PL ++A Y D++K+
Sbjct: 81 ISPENWKPATKTEQVIQALLALVHDPEPEHPLRADLAEEYSKDKKKF 127
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 91.5 bits (217), Expect = 6e-19
Identities = 42/80 (52%), Positives = 56/80 (70%), Gaps = 4/80 (5%)
Frame = +1
Query: 442 PFKPPKVAFTTRIYHPNINSNGSICLDIL----RAQWSPALTISKVLLSICSLLCDPNPD 609
PF+PPKV F T IYHPNI+S+G ICLD L + W PAL IS VL +I L+ +PNPD
Sbjct: 40 PFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWKPALNISSVLSTILILMAEPNPD 99
Query: 610 DPLVPEIARIYKTDREKYNE 669
DPL+ EI+ +K ++ ++ E
Sbjct: 100 DPLMAEISNEFKYNKAQFLE 119
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 84.6 bits (200), Expect = 6e-17
Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Frame = +1
Query: 265 ALKRINRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 441
A++ + EL+ L +P + P + F W I GP + Y GG F + FP DY
Sbjct: 1125 AVRALQLELKKLTEEPVEGFTVEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDY 1184
Query: 442 PFKPPKVAFTTRIYHPNINSNGSICLDILR-------------AQWSPALTISKVLLSIC 582
P+ PP F T+++HPNI +G +C+ IL +W+P + +LLS+
Sbjct: 1185 PYSPPTFRFLTKMWHPNIYESGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 1244
Query: 583 SLLCDPNPDDPLVPEIARIYKTDRE 657
SLL +PN P + + +++ RE
Sbjct: 1245 SLLNEPNTFSPANVDASVMFRKWRE 1269
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 84.2 bits (199), Expect = 9e-17
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 14/121 (11%)
Frame = +1
Query: 295 DLGRDPPAQCSAGPHG-EDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 471
+L + P SAG EDL+ W+ ++GP + Y+ G F ++ FP +YP +PP + F
Sbjct: 343 ELQKKPVEGFSAGLFDDEDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFI 402
Query: 472 TRIYHPNINSNGSICLDILR-------------AQWSPALTISKVLLSICSLLCDPNPDD 612
+ I+HPN++ NG +C+ IL +W P T+ ++LS+ S+L +PN +
Sbjct: 403 SDIWHPNVHKNGEVCISILHEPGEDKYGYEKADERWRPIHTVETIMLSVISMLAEPNDES 462
Query: 613 P 615
P
Sbjct: 463 P 463
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 82.6 bits (195), Expect = 3e-16
Identities = 34/52 (65%), Positives = 40/52 (76%)
Frame = +1
Query: 325 SAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 480
SAGP G+ L+ W +TI+GP S Y+GGVFFL IHFPTDYPFKPPKV R+
Sbjct: 43 SAGPKGDKLYEWYSTILGPPGSVYEGGVFFLDIHFPTDYPFKPPKVGQAIRL 94
>SB_47222| Best HMM Match : UQ_con (HMM E-Value=5)
Length = 46
Score = 74.9 bits (176), Expect = 5e-14
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +1
Query: 568 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNEL 672
LLSICSLLCDPNPDDPLVP+IARIYKTD+ KYNEL
Sbjct: 2 LLSICSLLCDPNPDDPLVPDIARIYKTDKPKYNEL 36
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 63.7 bits (148), Expect = 1e-10
Identities = 43/138 (31%), Positives = 65/138 (47%)
Frame = +1
Query: 256 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 435
S +K++ RE+ L DPP + ED+ QA+I GP FFLT
Sbjct: 103 SPQIIKQVAREIHGLTNDPPEGIKVFSNDEDITDIQASIEGPR--------FFLT----- 149
Query: 436 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDP 615
+I+HPN+ NG IC++ L+ W P L I +VLL++ LL PNP+
Sbjct: 150 -------------KIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESA 196
Query: 616 LVPEIARIYKTDREKYNE 669
L E ++ + Y++
Sbjct: 197 LNEEAGKLLLERYDDYSK 214
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Frame = +1
Query: 334 PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR-----IYHPNIN 498
P +D+ A I GP D+PY+GG F+ I P DYP +PP+V T ++PN+
Sbjct: 5 PDKDDIPKIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNLY 64
Query: 499 SNGSICLDIL 528
NG +CL I+
Sbjct: 65 RNGKVCLSII 74
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 61.3 bits (142), Expect = 7e-10
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Frame = +1
Query: 226 VESQYNST*NSQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGG 405
+E QYN A+KR+ RE ++L R+ A P ++LF W T+ GP D+ + GG
Sbjct: 1 MEKQYNLR---SPAVKRLMREAKEL-RNATELYHAQPLEDNLFEWHFTVRGPPDTEFAGG 56
Query: 406 VFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR---AQWSPALTISKVLLS 576
+ I P +YP KPP + T + ICL + W P+ +I VL++
Sbjct: 57 RYHGRIILPPEYPMKPPSIMLLTP--NGRFEIGKKICLSMSAHHPETWQPSWSIRTVLMA 114
Query: 577 ICSLL 591
I +
Sbjct: 115 IIGFM 119
>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
Length = 215
Score = 58.0 bits (134), Expect = 6e-09
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 379 PVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRAQWSPALT 555
P D Y+GG F ++ DYP PP IYHPN++ +GS+CL +L W+ +
Sbjct: 45 PTDGAYRGGQFKFSVK-TEDYPNTPPVPRCVNNIYHPNMDLDDGSVCLSLL-DDWNESND 102
Query: 556 ISKVLLSICSLLCDPNPDDPLVP 624
+ ++ + L +PN +DPL P
Sbjct: 103 LEDLVQGLLFLFYNPNLEDPLSP 125
>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
Length = 243
Score = 57.6 bits (133), Expect = 9e-09
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = +1
Query: 379 PVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTI 558
P D Y+GG F ++ TDYP P + T+IYHPN++ +C+ +L W + +
Sbjct: 45 PTDGAYRGGQFKFSVR-TTDYPNVAPSINCKTKIYHPNMDGYDGVCMSLL-DDWQASNDL 102
Query: 559 SKVLLSICSLLCDPNPDDPL 618
++ + L +PN +DPL
Sbjct: 103 EDLVQGLLFLFYNPNLEDPL 122
>SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24)
Length = 48
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +1
Query: 535 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTD 651
+WSPAL I VLLSI +LL PNPDDPL ++A +K +
Sbjct: 2 KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKVN 40
>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 48.0 bits (109), Expect = 7e-06
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Frame = +1
Query: 271 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQA---TIMGPV----DSPYQGGVF-FLTIH 426
KR+ +E QD+ R SA ++LF W TI G D G F L I
Sbjct: 737 KRLMKEFQDVSRKTERIFSAELVDDNLFEWNVKLHTIDGDSLLYRDMVETGSKFILLNIT 796
Query: 427 FPTDYPFKPPKV-AFTTRIYHPNINSNGSICLDILRAQ-WSPALTISKVLL 573
FP ++PF PP + RI + G+IC+++L + WS A T+ V+L
Sbjct: 797 FPENFPFAPPFMRVLAPRIEGGFVLDGGAICMELLTPKGWSSAYTVEAVVL 847
>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
Length = 123
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 343 EDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 474
++LF W T+ GP D+ + GG + I P +YP KPP + T
Sbjct: 1 DNLFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMKPPSIMLLT 44
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 376 GPVDSPYQGGVFFLTIHFPTDYPFKPPKVA-FTTRI 480
GPV +PY+GGV+ + + P YPFK P +A FT I
Sbjct: 56 GPVGTPYEGGVWKVRVDLPEKYPFKSPSIANFTIEI 91
>SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8)
Length = 55
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +1
Query: 361 QATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 474
+A + GPVD+PY G F I FP YP PP V T
Sbjct: 9 RALVTGPVDTPYSRGCFVFDIFFPGTYPNVPPLVKLIT 46
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 370 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPK 459
I GP ++P++GG + L I P YPF PPK
Sbjct: 693 IRGPPETPFEGGTYNLDIVIPETYPFNPPK 722
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 358 WQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI---YHPNINSNGSICL 519
++ I GP +PY G+F I P +YP PP + + +PN+ +G +C+
Sbjct: 636 FRVMIEGPAGTPYDHGLFAFDILLPANYPDAPPSFHYLSMCNGRLNPNLYEDGKVCI 692
>SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 394 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG 507
++ ++ L I +YP KPP V F ++I +NS G
Sbjct: 3 FENRIYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSKG 40
>SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 394 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG 507
++ ++ L I +YP KPP V F ++I +NS G
Sbjct: 3 FENRIYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSKG 40
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 619 PKGRLGWDRIEVSRLRATLWIW*ALVTTVHAECQDRW 509
P RL W+R+E+SR+ LW W V + Q W
Sbjct: 166 PLFRLHWNRVEMSRVMVFLW-WIKFALRVSMQKQINW 201
>SB_40772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 439 YPFKPPKVAFTTRIYHPNINSNG 507
+P P V FT+ ++HP I+ NG
Sbjct: 118 FPDSRPLVKFTSNVFHPQIHENG 140
>SB_38537| Best HMM Match : VWA (HMM E-Value=0)
Length = 1174
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +1
Query: 1 AEKCLISINSCFVPIIISFVL 63
A+KC+ + +CFVPI ++F++
Sbjct: 512 AKKCVPKVKTCFVPIDVAFIM 532
>SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)
Length = 1239
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 541 SPALTISKVLLSICSLLCDPNPD--DPLVPEIARIYKTDREK 660
S +LTISK + IC LL DPN + + + IY+ EK
Sbjct: 116 SSSLTISKFVPHICKLLGDPNSQVRERAIDTLVEIYRHVGEK 157
>SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15)
Length = 140
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 414 EENSSLIRTVNWAHNCGLPMEQIFTV-WACRTLCW 313
E +S +R V WA N GLP I + CR + W
Sbjct: 35 EAHSDWVRDVAWAPNVGLPTSTIASCSQDCRVIIW 69
>SB_47019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 280 NRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSP--YQGGVFFLTIHFPTDYPFKP 453
++E++++ + PP G G + W + +DS + G+ + TD F+
Sbjct: 89 DKEIENIRKPPPPLVPLGRQGTECKTWLRMQLHDIDSDVRMRSGLRMKGTYNDTDIDFEE 148
Query: 454 PKVAFTTRIY 483
A TTR+Y
Sbjct: 149 ISKAETTRLY 158
>SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16)
Length = 980
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 343 EDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYP 444
E+ F W + ++ VDS + GGV+ L + P P
Sbjct: 186 EESFQWMSHVLPAVDSIHSGGVYCLCLVPPGGLP 219
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -2
Query: 392 GLSTGPIIVACQWNRSS-PCGPAEHCAGGSLPRSCNS 285
GL + A WN S C P A GSL +CNS
Sbjct: 803 GLRCDQCVSAYYWNPSGYGCSPCNCDASGSLATNCNS 839
>SB_33210| Best HMM Match : Spectrin (HMM E-Value=1.3e-12)
Length = 186
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 308 IHQHNVRQAHTVKICSIGKPQLWAQLTVLIKE 403
+H+ N + +++C QLW L VLIK+
Sbjct: 56 LHRENYHDSERIQVCKGRIIQLWELLLVLIKQ 87
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 563 KCCSQSAHFYAIPTQTTLWCQKLLGSIKQTE 655
KCCSQ FYA +T C K L + E
Sbjct: 301 KCCSQGCTFYA-TAETAFLCSKCLNEYLRKE 330
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,264,568
Number of Sequences: 59808
Number of extensions: 499581
Number of successful extensions: 1160
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -