Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0376
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 288 3e-78
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 288 3e-78
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 132 3e-31
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 131 5e-31
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 131 5e-31
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 113 1e-25
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 110 8e-25
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 105 2e-23
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 101 5e-22
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 101 6e-22
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 100 8e-22
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 96 2e-20
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 89 3e-18
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 89 3e-18
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 81 7e-16
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 78 7e-15
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 77 9e-15
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 76 3e-14
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 69 4e-12
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 66 2e-11
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 66 2e-11
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 65 5e-11
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 64 7e-11
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 60 1e-09
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 52 3e-07
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 43 2e-04
Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 31 0.75
AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormo... 30 1.3
Z81461-6|CAB03837.1| 272|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical... 29 3.0
AL032639-9|CAA21633.1| 303|Caenorhabditis elegans Hypothetical ... 28 5.3
Z92829-13|CAB07344.2| 337|Caenorhabditis elegans Hypothetical p... 28 6.9
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho... 28 6.9
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho... 28 6.9
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 27 9.2
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 27 9.2
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 27 9.2
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 27 9.2
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 27 9.2
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 288 bits (706), Expect = 3e-78
Identities = 128/137 (93%), Positives = 134/137 (97%)
Frame = +1
Query: 262 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 441
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SPYQGGVFFLTIHFPTDY
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 442 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLV 621
PFKPPKVAFTTRIYHPNINSNGSICLDILR+QWSPALTISKVLLSICSLLCDPNPDDPLV
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 622 PEIARIYKTDREKYNEL 672
PEIARIYKTDRE+YN+L
Sbjct: 121 PEIARIYKTDRERYNQL 137
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 288 bits (706), Expect = 3e-78
Identities = 128/137 (93%), Positives = 134/137 (97%)
Frame = +1
Query: 262 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 441
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SPYQGGVFFLTIHFPTDY
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 442 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLV 621
PFKPPKVAFTTRIYHPNINSNGSICLDILR+QWSPALTISKVLLSICSLLCDPNPDDPLV
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 622 PEIARIYKTDREKYNEL 672
PEIARIYKTDRE+YN+L
Sbjct: 121 PEIARIYKTDRERYNQL 137
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 132 bits (318), Expect = 3e-31
Identities = 64/127 (50%), Positives = 82/127 (64%)
Frame = +1
Query: 271 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 450
+RI +E Q L DP SA P + ++ I GP DSP+ GGVF L + P +YP
Sbjct: 7 RRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMA 66
Query: 451 PPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 630
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNP+DPL ++
Sbjct: 67 APKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPEDPLATDV 126
Query: 631 ARIYKTD 651
A +KT+
Sbjct: 127 AEQWKTN 133
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 131 bits (316), Expect = 5e-31
Identities = 54/133 (40%), Positives = 89/133 (66%)
Frame = +1
Query: 271 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 450
+R+ R+ + L DPPA S P +++ W+A I GP ++P++ G F L++ F +YP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 451 PPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 630
PP V F ++++HPN+ ++GSICLDIL+ +WSP ++ +L SI SLL +PNP+ P
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 631 ARIYKTDREKYNE 669
A++Y+ +R +Y +
Sbjct: 127 AQLYQENRREYEK 139
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 131 bits (316), Expect = 5e-31
Identities = 54/133 (40%), Positives = 89/133 (66%)
Frame = +1
Query: 271 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 450
+R+ R+ + L DPPA S P +++ W+A I GP ++P++ G F L++ F +YP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 451 PPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 630
PP V F ++++HPN+ ++GSICLDIL+ +WSP ++ +L SI SLL +PNP+ P
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 631 ARIYKTDREKYNE 669
A++Y+ +R +Y +
Sbjct: 127 AQLYQENRREYEK 139
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 113 bits (272), Expect = 1e-25
Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 14/150 (9%)
Frame = +1
Query: 265 ALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 441
ALKR+ E ++L PP A P ED F W+ I GP ++ + GVF I FP DY
Sbjct: 5 ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 442 PFKPPKVAFTTRIYHPNINSNGSICLDILRA-------------QWSPALTISKVLLSIC 582
P PPK+ FT I+HPNI ++G +C+ IL A +WSP +I K+LLS+
Sbjct: 65 PLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVV 124
Query: 583 SLLCDPNPDDPLVPEIARIYKTDREKYNEL 672
S+L +PN + P A++++ DR ++ ++
Sbjct: 125 SMLAEPNDESPANVSAAKMWREDRAQFEKI 154
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 110 bits (265), Expect = 8e-25
Identities = 51/101 (50%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Frame = +1
Query: 343 EDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICL 519
E+L + I GP D+PY GG+F L I P YPF PP V F+T+I+HPN++S G ICL
Sbjct: 34 ENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICL 93
Query: 520 DILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 642
DIL+ QW+ +LT+ VLLSI +L+C P P DP +A+ Y
Sbjct: 94 DILKDQWAASLTLRTVLLSIQALMCTPEPKDPQDAVVAKQY 134
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 105 bits (253), Expect = 2e-23
Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Frame = +1
Query: 265 ALKRINRELQDLGR-DPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 441
A +R+ +EL DL A + +L W ++ P PY G F + I FP DY
Sbjct: 3 ATRRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDY 61
Query: 442 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQ-WSPALTISKVLLSICSLLCDPNPDDPL 618
PFKPPKVAF T+IYHPN++ G CL I+ A+ W PA +V++++ SL+ +P P P+
Sbjct: 62 PFKPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEPSHPI 121
Query: 619 VPEIARIYKTDREKY 663
++A ++ D +K+
Sbjct: 122 RADVAEEFQKDHKKF 136
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 101 bits (242), Expect = 5e-22
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = +1
Query: 262 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTI 423
MALKRI +EL DLGRDPPAQCS G G+DL+HWQATIMGP +SPYQGG+FFLTI
Sbjct: 1 MALKRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMGPPESPYQGGIFFLTI 54
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 101 bits (241), Expect = 6e-22
Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 14/145 (9%)
Frame = +1
Query: 277 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP 453
+ ++L D+ R P SAG D++ W+ ++GP D+ Y+GG F + FP DYP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 454 PKVAFTTRIYHPNINSNGSICLDIL-------------RAQWSPALTISKVLLSICSLLC 594
PK+ F + I+HPNI+ G++C+ IL +W P T+ +LLS+ S+L
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
Query: 595 DPNPDDPLVPEIARIYKTDREKYNE 669
DPN + P + A K RE Y E
Sbjct: 128 DPNFESPANVDAA---KMQRENYAE 149
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 100 bits (240), Expect = 8e-22
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 13/147 (8%)
Frame = +1
Query: 256 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 435
S AL+ + EL++L P + + ++LF W I GP + YQGG F +I FP+
Sbjct: 8 SSGALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPS 67
Query: 436 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRA-------------QWSPALTISKVLLS 576
+YP+ PP + FTT+++HPN+ NG +C+ IL + +W+P ++ +LLS
Sbjct: 68 NYPYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLS 127
Query: 577 ICSLLCDPNPDDPLVPEIARIYKTDRE 657
+ SLL +PN P + + +Y+ +E
Sbjct: 128 VISLLNEPNTSSPANVDASVMYRKWKE 154
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 95.9 bits (228), Expect = 2e-20
Identities = 56/147 (38%), Positives = 81/147 (55%), Gaps = 20/147 (13%)
Frame = +1
Query: 256 SQMALKRINRELQDLGRDPPAQCSAGPHGE----DLFHWQATIMGPVDSPYQGGVFFLTI 423
S +AL R+ R+ +++ AG H E +L + I GP +PY GG F + +
Sbjct: 16 SNLALARVTRKCKEVANASDIT-EAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKV 74
Query: 424 HFPTDYPFKPPKVA---------------FTTRIYHPNINSN-GSICLDILRAQWSPALT 555
P YPF+PPKV F TRI+HPNI+S G+ICLDIL+ +W+ +LT
Sbjct: 75 DIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLT 134
Query: 556 ISKVLLSICSLLCDPNPDDPLVPEIAR 636
+ VLLS+ ++LC P P DP +A+
Sbjct: 135 LRTVLLSLQAMLCSPEPSDPQDAVVAK 161
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 89.0 bits (211), Expect = 3e-18
Identities = 38/110 (34%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Frame = +1
Query: 346 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 525
+LF+W+ I G D+ ++GG++ + + F D+P PPK F ++HPN+ +G++CL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 526 L--RAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNE 669
L W P+++I ++L+ I LL PN +DP E +IY +R +Y +
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEK 146
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 89.0 bits (211), Expect = 3e-18
Identities = 38/110 (34%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Frame = +1
Query: 346 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 525
+LF+W+ I G D+ ++GG++ + + F D+P PPK F ++HPN+ +G++CL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 526 L--RAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNE 669
L W P+++I ++L+ I LL PN +DP E +IY +R +Y +
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEK 146
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 81.0 bits (191), Expect = 7e-16
Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Frame = +1
Query: 376 GPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRAQWSPAL 552
GP D+ Y+ GV+ + + P YPFK P + F +I+HPNI+ ++G++CLD++ W+
Sbjct: 41 GPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQAWTALY 100
Query: 553 TISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKY 663
++ + + LL PN DPL E AR+Y E+Y
Sbjct: 101 DLTNIFDTFLPQLLTYPNAADPLNGEAARLYIHKPEEY 138
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 77.8 bits (183), Expect = 7e-15
Identities = 45/116 (38%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Frame = +1
Query: 256 SQMALKRINRELQDLGRDPPAQCSAG--PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHF 429
S A +R+ +EL L + P DL W+ ++G + Y G VF L F
Sbjct: 2 SDAATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTF 61
Query: 430 PTDYPFKPPKVAFT--TRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLL 591
YPF P+V F T HP+I SNG ICL IL W+PAL++ V LSI S+L
Sbjct: 62 GPQYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSML 117
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 77.4 bits (182), Expect = 9e-15
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Frame = +1
Query: 361 QATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICL-DILRA 534
Q I G ++PY+GG+F L I YPFK P V F T+I+HP+++ +G+ICL D+
Sbjct: 382 QGIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNG 441
Query: 535 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNE 669
W ++TI KVL+ I S + + N +P+ EI +RE + +
Sbjct: 442 VWPVSMTIYKVLIVIQSWMSNFNEKEPIDVEILEQATNNREVFEK 486
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 75.8 bits (178), Expect = 3e-14
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Frame = +1
Query: 256 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 435
S +AL+R+ ++ Q L ++P A P ++ W+ I+G +PY+GG++ + FP
Sbjct: 6 STVALQRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPK 65
Query: 436 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ---WSPALTISKVLLSICSLLCDPNP 606
D+PFKPP + T + +N +CL I W+PA T+S ++ + S + D P
Sbjct: 66 DFPFKPPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQP 123
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 68.5 bits (160), Expect = 4e-12
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Frame = +1
Query: 340 GEDLF-HWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 516
G D++ W T+ GP SP++GG + ++++F +P PP F T ++HPN++ GSI
Sbjct: 64 GADIWCSWICTVPGPRGSPWEGGEYEVSVNFHK-WPIIPPICEFKTPLHHPNVDLRGSIY 122
Query: 517 LDILRAQ-WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKY 663
L +L + WS ++ K+L I +LL P+ E Y+ RE Y
Sbjct: 123 LKMLEQEHWSSETSLKKLLREISNLLATPDLTQAANIEAWMEYENQRENY 172
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 66.1 bits (154), Expect = 2e-11
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Frame = +1
Query: 379 PVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ------W 540
P + Y+GG F I P +Y PP V T+++HPNIN +GSICL ILR W
Sbjct: 67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGW 126
Query: 541 SPALTISKVLLSICSLLCD-PNPDDPLVPEIARIYKTDREKYN 666
P ++ V+ + SL D + +D L + A+++ +RE +N
Sbjct: 127 RPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFN 169
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 12/82 (14%)
Frame = +1
Query: 370 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR-----IYHPNINSNGSICLDIL-- 528
I GP D+PY G+F I FPT YPF PPK AF T ++PN+ ++G ICL IL
Sbjct: 449 ISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGT 508
Query: 529 -----RAQWSPALTISKVLLSI 579
+W+P ++ +VL+SI
Sbjct: 509 WEGRPEEKWNPYCSLMQVLVSI 530
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 64.9 bits (151), Expect = 5e-11
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Frame = +1
Query: 226 VESQYNST*NSQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGG 405
+ QYN+ ++R+ +E +L R P A P ++LF W TI G + + ++GG
Sbjct: 1 MSEQYNT---KNAGVRRLMKEAMEL-RQPTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGG 56
Query: 406 VFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL---RAQWSPALTISKVLLS 576
++ I FP DYP KPP + T + N +CL I W P+ +I LL+
Sbjct: 57 IYHGRIIFPADYPMKPPNLILLTP--NGRFELNKKVCLSISGYHPETWLPSWSIRTALLA 114
Query: 577 ICSLL 591
+ L
Sbjct: 115 LIGFL 119
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 64.5 bits (150), Expect = 7e-11
Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Frame = +1
Query: 256 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 435
S A++R+ ++ L +DP A P+ +++ W + G D+P+ GG ++ + F
Sbjct: 17 SSSAVRRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKE 76
Query: 436 DYPFKPPKVAFTTRIYHPNINSNGSICL---DILRAQWSPALTISKVLLSICSLLCDPNP 606
++P+ PP + T + +N +CL D W+P T+S +L+ + S + + +P
Sbjct: 77 NFPWSPPAITMITP--NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFMNENSP 134
Query: 607 DDPLV---PEIARIYKTDREKYN 666
+ P+ R+Y +++N
Sbjct: 135 AAGSIAGTPQDQRMYAAASKEFN 157
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 60.1 bits (139), Expect = 1e-09
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
Frame = +1
Query: 268 LKRINRELQDLGRDPPAQCSAGPHGE---DLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 438
L RI +E+ DL ++ E D+F ++ G + Y+ +F LT+ +
Sbjct: 15 LSRIRKEIADLAKNKRRFIKDFRKIEKCKDIFQFKIIGDGVL---YKNMIFTLTLDVNVE 71
Query: 439 YPFKPPKVAFTTRIYHPNINS-NGSICLD-ILRAQWSPALTISKVLLSICSLLCDPNPDD 612
YPFKPP + F +YHPN++ +C +L+ W P T+ VLL++ LL +P+
Sbjct: 72 YPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEPDLSR 131
Query: 613 PLVPEIARIY 642
P+ + A Y
Sbjct: 132 PVNIDAAHDY 141
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Frame = +1
Query: 349 LFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSI---C 516
L W A+I+GP +PY+ ++ L I +YP +PP V FTT+++ +N SNG I
Sbjct: 38 LTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTTKVHMVGVNQSNGVIDKRN 97
Query: 517 LDILRAQWSPALTISKVLLSI 579
L LR WS + I VL I
Sbjct: 98 LTTLR-NWSNSYMIKTVLEDI 117
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 349 LFHWQATIMGPVDSPYQGGVFFLTIHF-PTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 525
LFH I GPV S Y+GG FF I+ P P+V F T I+HPN+ G+ D+
Sbjct: 63 LFH--VIIDGPVGSIYEGGTFFADINIQPYQNHSLIPRVCFHTFIFHPNLGKYGN--WDM 118
Query: 526 LRAQW 540
QW
Sbjct: 119 RGIQW 123
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 370 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLD 522
I GP D+PY+ GVF + + FP +YP P++ F T I++ + S G + ++
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCAVEPSTGQVHIE 86
>Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical
protein Y69H2.6 protein.
Length = 292
Score = 38.7 bits (86), Expect = 0.004
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 8/137 (5%)
Frame = +1
Query: 286 ELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP--PK 459
E ++ R P P + F W I + GG+F IH P ++P P+
Sbjct: 27 EFVEVCRAPIDGIFVSPSANNKFLWFGVIFVR-KGIFGGGIFRFNIHIPLEFPDASDLPR 85
Query: 460 VAF-TTRIYHPNI-NSNGSICLD-ILRAQWSP---ALTISKVLLSICSLLCDPNPDDPLV 621
V F + ++HP I + +CL+ W +L V+L D + D +
Sbjct: 86 VIFEQSNLFHPLICTKSKELCLNRSFPEGWKKEKHSLRRVLVVLQRSFYSYDVDTDKCIN 145
Query: 622 PEIARIYKTDREKYNEL 672
PE + +YK R+K+ E+
Sbjct: 146 PEASVLYKEHRDKFREI 162
>Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical
protein C17D12.5 protein.
Length = 139
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 409 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSL 588
+ +T+ P +PF PP + T + N L + QW P+ I VL+ CS+
Sbjct: 51 YIVTVAIPPKFPFSPPAITCKT-------DKNMKF-LFLEENQWKPSTGIVAVLIEACSV 102
Query: 589 LC--DPNPDDPLVPEI 630
+ D P P++P I
Sbjct: 103 ISRRDLVPRAPVLPRI 118
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = +2
Query: 401 EEFSSLPYISLQTTLSNHQKLHSQHVFIILT*TVMVPSVLTFCVHSGHQRSPYPKCCSQS 580
EE++ + + T Q Q+V +++T ++M PS++T + G Q + P+
Sbjct: 1202 EEYTPMNFAPPPTFTYPQQMPMMQYVPVMMTSSMMTPSMMTPSMMPGQQIAMVPQQMMMQ 1261
Query: 581 AHFYAIP 601
HF +P
Sbjct: 1262 PHFSYVP 1268
>AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 166 protein.
Length = 363
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 412 FLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSIC 582
F I+ P P + ++ +I + +++ + D LR QW P ++ KVL+ C
Sbjct: 300 FCLINNPRSAPSRLLEIISINQILNRQFHASYKL-FDALRKQWDPTMSFQKVLVESC 355
>Z81461-6|CAB03837.1| 272|Caenorhabditis elegans Hypothetical
protein C04F12.8 protein.
Length = 272
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 463 AFTTRIYHPNINSNGSICLDILRAQWSP-ALTISKVLLSICSLLCDPNPDDPLVPEIARI 639
AF+ Y P+++S S+ LR +SP +L S + L+ L P P + +
Sbjct: 200 AFSASTYRPSVSSASSLATSSLRRAYSPSSLPASSLALTTSYSLFSPAPTRKPRQSLFSM 259
Query: 640 YKT 648
Y T
Sbjct: 260 YST 262
>AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical
protein T12B5.3 protein.
Length = 304
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 450 FERVVCREMYGKEENSSLIRTVNWA--HNCGLPMEQIF 343
FER+ C E + +N+ T W HNC +P+EQ+F
Sbjct: 185 FERLACLEQW---KNAKTFETP-WVLVHNCQIPIEQLF 218
>AL032639-9|CAA21633.1| 303|Caenorhabditis elegans Hypothetical
protein Y38F1A.8 protein.
Length = 303
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -3
Query: 256 YFMLSYTDFQLDNETVSQGPLIRDCKMAPCLNAKVPPKSFYVVIVKSQQ 110
YF+++YT + E VS +CK P +N +PP S+ + I + Q+
Sbjct: 59 YFVVAYT-YLFQFEKVSN---FTECKECPNMNITLPPVSYSIGIWQPQK 103
>Z92829-13|CAB07344.2| 337|Caenorhabditis elegans Hypothetical
protein F10A3.6 protein.
Length = 337
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 550 LTISKVLLSICSLLCDPNP--DDPLVPEIARIYKTDREKYNEL 672
++IS + S+C + P+P D+ +PE + Y + E+YN L
Sbjct: 140 ISISFLWFSMCYFVNGPSPMKDENFLPEFQKNYCMEPEEYNYL 182
>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4
homolog protein 1, isoformb protein.
Length = 1420
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 526 LRAQWSPALTISKVLLSICSLLCDPNPD--DPLVPEIARIYKTDR 654
L +WS A+ +K + S LLC D + L+ E+ +Y D+
Sbjct: 606 LEMEWSSAVQCAKSVKSALELLCTTYCDIVESLIREVVEVYADDQ 650
>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4
homolog protein 1, isoforma protein.
Length = 1418
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 526 LRAQWSPALTISKVLLSICSLLCDPNPD--DPLVPEIARIYKTDR 654
L +WS A+ +K + S LLC D + L+ E+ +Y D+
Sbjct: 606 LEMEWSSAVQCAKSVKSALELLCTTYCDIVESLIREVVEVYADDQ 650
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 553 TISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNE 669
TIS +C LL + +P+ PL I R++ +R K ++
Sbjct: 303 TISFPPSQVCDLLIEHDPEMPLTKVINRMFGEERPKLSD 341
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 537 VVTSAHHIQSVALNLLTSMRSQPRRPFG 620
+V S+ HI +V +++ +M + RRP+G
Sbjct: 834 IVRSSSHIDAVKRDIMRTMSTTSRRPYG 861
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 537 VVTSAHHIQSVALNLLTSMRSQPRRPFG 620
+V S+ HI +V +++ +M + RRP+G
Sbjct: 814 IVRSSSHIDAVKRDIMRTMSTTSRRPYG 841
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 537 VVTSAHHIQSVALNLLTSMRSQPRRPFG 620
+V S+ HI +V +++ +M + RRP+G
Sbjct: 814 IVRSSSHIDAVKRDIMRTMSTTSRRPYG 841
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 553 TISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNE 669
TIS +C LL + +P+ PL I R++ +R K ++
Sbjct: 303 TISFPPSQVCDLLIEHDPEMPLTKVINRMFGEERPKLSD 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,666,005
Number of Sequences: 27780
Number of extensions: 384631
Number of successful extensions: 1038
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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