Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0374
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 38 0.002
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 31 0.13
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.93
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 29 0.93
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 25 8.7
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 8.7
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 25 8.7
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 37.5 bits (83), Expect = 0.002
Identities = 37/179 (20%), Positives = 80/179 (44%), Gaps = 5/179 (2%)
Frame = +2
Query: 101 NAVSNPTKVKMEESPALLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREIITQGVVKNLK 280
N +P + ++ S L L ++ LII YLD + + ++ + + + V
Sbjct: 29 NHEEDPIQPVLKNSNLFL-LNRDIWSLIINYLDAFDILRLMHSSRQFYYWLRKSAVDECC 87
Query: 281 FSLNILSTADSLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQA-----VRHLKSLQTLDV 445
F+ N L+ +T + ++ L G + K +L + + + LQT+ +
Sbjct: 88 FNNNFLNLQPYQRTVPVASDLEWATEVDLYGNPPILKLQLRDSFVWSMLAKFQGLQTIAL 147
Query: 446 TYTDISICDLLDIHPLCPTVKNIAINYIFGKLGMTRMTPEFIEACQNLLAKFENIHFVG 622
T ++I + +I PTVK ++I + G ++ + EF++ ++ EN++ +G
Sbjct: 148 DGTGVTISSVTNILLNIPTVKTLSIRWCVGVCSLSLI--EFLQNSKSRTFSLENLYVLG 204
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 31.5 bits (68), Expect = 0.13
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +2
Query: 149 LLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREIIT 256
+LNLP E++I+I +LD ++ + TCK +++++
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLS 66
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.7 bits (61), Expect = 0.93
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = -3
Query: 465 MLISVYVTSKVCRLFKWRTACMSLVFVKSCIPLSDRSFRL*ATALKKSVFKE----SAVD 298
+L S+ +K R FK S + + SC R+F L ++K S KE S+VD
Sbjct: 3779 LLSSIETATKNMRTFKELAETSSFIEMSSCFSKVLRAFNLKFQSMKLSSLKEKLRSSSVD 3838
Query: 297 SMFRENFKFFTTPC 256
M + F C
Sbjct: 3839 KMSCQLLMLFLPVC 3852
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 28.7 bits (61), Expect = 0.93
Identities = 25/100 (25%), Positives = 46/100 (46%)
Frame = +2
Query: 353 KDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDLLDIHPLCPTVKNIAINYIF 532
+DLS S + K+ + K L +L + ++ ++ V+ I IN+
Sbjct: 648 RDLSFSPVFQKFPLKVNTSATLSKDLMSLPINEWVKNVMYIVTHETDWKVVQYILINFT- 706
Query: 533 GKLGMTRMTPEFIEACQNLLAKFENIHFVGSSINLMYSNF 652
+L T+M + +EA Q LL +I S+N+ +S+F
Sbjct: 707 NQLRNTKMFTKTVEALQLLLNSLRDIINGKQSLNINFSDF 746
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.7
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Frame = +2
Query: 167 EMIILIIKYLDTPTVYN--IYNTCKPLREIITQGVVKNLKFSLNILSTADSLKTDFFKAV 340
+MI L+I TPT YN + +PL + + V +L+ ++ST T +++
Sbjct: 307 DMIGLMITVKGTPTTYNKDLQEDKEPLFDAF-KTVSDSLQILTGVVSTLTINPTKIAESL 365
Query: 341 AYSLKDLSLSGMHDLTKTKLIQAVRHL-----KSLQTLDVTYTDISICDLLDIHPLCPTV 505
L L+ + + K + H+ + + + T +S+ DL +HPL
Sbjct: 366 TPDLLATDLA-EYLVRKGLPFRQTHHISGSAVRMAEERNTTLDKLSVSDLQSLHPLFDED 424
Query: 506 KNIAINY 526
+ NY
Sbjct: 425 VSKVFNY 431
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.7
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +2
Query: 113 NPTKVKMEESPALLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREIITQG--VVKNLKF- 283
NP + SP + P+ + L + YN T P+ Q N F
Sbjct: 301 NPLSISSRPSPCCPSTPSSAVTLSNGFDSQSNAYNNSGTGPPMLYKFPQRSYTAPNTSFN 360
Query: 284 SLNILSTADSLKTDFFKAVAYSLKDLSLSG 373
S +S+ SL T F V + + SL+G
Sbjct: 361 SQRRMSSITSLPTASFCPVKHGVSPPSLAG 390
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 131 MEESPALLNLPAEMIILIIKYLDTPTVYNIYNTCKPL 241
M +SP L L ++++ I YLD + ++ TCK L
Sbjct: 1 MAKSP-FLELSYDILLEISTYLDYKDIVHLSETCKSL 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,305
Number of Sequences: 5004
Number of extensions: 63027
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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