Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0374
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0141 - 31955782-31956801 39 0.005
02_02_0645 - 12599888-12600527,12602879-12603192 32 0.56
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397... 31 0.74
12_01_0054 + 463743-464414,464896-465024,465336-465440,465524-46... 31 0.97
11_01_0054 + 416626-417297,417757-417885,418197-418301,418385-41... 31 0.97
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 31 1.3
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 30 1.7
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 30 2.2
04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692 30 2.2
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 29 3.9
04_03_0190 + 12448027-12450825 29 3.9
01_06_0790 + 32019972-32020101,32020461-32020657,32020790-320209... 29 3.9
11_06_0580 - 25184019-25184024,25184096-25184851,25184870-251849... 29 5.2
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794... 29 5.2
10_01_0200 + 2171178-2172338 29 5.2
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 29 5.2
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 6.9
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727... 28 6.9
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 28 9.1
12_02_0538 + 20134594-20136042 28 9.1
11_01_0790 + 6617659-6619593,6619696-6620106 28 9.1
10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782 28 9.1
>03_06_0141 - 31955782-31956801
Length = 339
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +2
Query: 140 SPALLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREII 253
SP+LL+LP ++++ I+ D TV ++ TCK LR II
Sbjct: 41 SPSLLDLPLDVLLKIVARCDAATVLSLAATCKALRRII 78
>02_02_0645 - 12599888-12600527,12602879-12603192
Length = 317
Score = 31.9 bits (69), Expect = 0.56
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +2
Query: 305 ADSLKTD----FFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICD 472
ADS TD + A SLK L LS +++ + +A++ L+ LD+T+ +
Sbjct: 90 ADSFVTDGLLLYISERASSLKSLQLSMCLNVSNEGMAEAMKGFPRLEELDITFCSLYGDV 149
Query: 473 LLDIHPLCPTVKNIAINYIFGKLGMTRMTPEFIE 574
+ CP +K +N + L M P+ ++
Sbjct: 150 CASVGKACPELKCFRLNERY-TLQMDYAAPDIMD 182
>06_01_0558 -
3968211-3969475,3970198-3970266,3970374-3970529,
3971075-3971405
Length = 606
Score = 31.5 bits (68), Expect = 0.74
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +2
Query: 407 AVRHLKSLQTLDVTYTDISICDLLDIHPLCPTVKNIAINYIFGKLGMTRMTPEFIEACQN 586
AV HL++L TLD++Y +IS ++ P ++ ++ +N ++ P I N
Sbjct: 412 AVSHLENLSTLDLSYNNIS-GEITASFPTTMSMNHLVLN----DNNISGEIPTSICTNVN 466
Query: 587 L-LAKFENIHFVGSSINLMYSNFSIHVLN 670
L + F N GS N + SN +LN
Sbjct: 467 LGVVDFSNNKLTGSIPNCIASNHLFFILN 495
>12_01_0054 +
463743-464414,464896-465024,465336-465440,465524-465917,
466325-466422,466505-466753,466920-466979
Length = 568
Score = 31.1 bits (67), Expect = 0.97
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 347 SLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVT-YTDISICDLLDIHPLCPTV 505
SL++LSLS +T T L V LK+L LDVT I+ L I CP++
Sbjct: 341 SLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSL 394
>11_01_0054 +
416626-417297,417757-417885,418197-418301,418385-418778,
419186-419283,419366-419614,419784-419843
Length = 568
Score = 31.1 bits (67), Expect = 0.97
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 347 SLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVT-YTDISICDLLDIHPLCPTV 505
SL++LSLS +T T L V LK+L LDVT I+ L I CP++
Sbjct: 341 SLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSL 394
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +2
Query: 350 LKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDI-----SICDLLDIHPLC 496
L+ L GM D +L + L LQTLDV YT + +IC L + LC
Sbjct: 608 LRQLRYLGMKDTRVAELPMEIGDLVHLQTLDVRYTGLKELPSTICKLSKLMRLC 661
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 284 SLNILSTAD-SLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDV 445
+L +L+ D + +F +L+ L GM + K +L Q + +L+ LQTLDV
Sbjct: 567 ALRVLALEDCDITGGYFLKHLGNLRQLRYLGMRNTGKVELPQEIGNLRHLQTLDV 621
>05_03_0104 -
8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +2
Query: 347 SLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDV 445
SL L G+ D TKL + VR+LK LQTLD+
Sbjct: 768 SLLHLRYLGLVDTYITKLPREVRYLKFLQTLDL 800
>04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692
Length = 1171
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 350 LKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDLLDIHPL 493
L+ LSL G ++T L ++ LK LQTLD+ +T + L +H L
Sbjct: 833 LRFLSLRGHREITH--LPDSLSGLKYLQTLDIRHTSVVYIALQTLHEL 878
>08_01_0501 +
4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 287 LNILSTADSLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDI 460
L +L + SL D L L + TKL + + L L+TLD++YT+I
Sbjct: 579 LRVLDLSYSLLKDKHLKNIEKLHFLKYLSLRSTLITKLPRKIGQLNCLETLDISYTEI 636
>04_03_0190 + 12448027-12450825
Length = 932
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Frame = +2
Query: 284 SLNILSTADSLKTDFFKA-VAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDI 460
SL L T ++ K +A LK ++ + + L ++++ +K L LD+ +D
Sbjct: 688 SLQTLFTIEASKCFVQQANKLVQLKSFRITKVRGSHCSVLSESIKRMKQLVYLDILASDE 747
Query: 461 SICDLLDIHPLCPTVKNIAINYIFGKLGMTRMTPEFIEACQNLLAKF 601
LDI P T++ + + GKL + + F C NL F
Sbjct: 748 EEILDLDISPPPSTLEKLCLR---GKLNDSNLHSFFNSFCNNLTCLF 791
>01_06_0790 +
32019972-32020101,32020461-32020657,32020790-32020993,
32021444-32021645,32021798-32021886,32022567-32022662,
32022710-32022814,32023516-32023556,32023685-32023777,
32023853-32023970,32024488-32024578,32024693-32024766,
32025008-32025187,32025643-32025681
Length = 552
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 482 CQVNHRCLYQCMLHLKSVDFSNGVR 408
C ++ CL CM+H+K V +N R
Sbjct: 359 CSLSWHCLTHCMVHVKKVQLANRFR 383
>11_06_0580 -
25184019-25184024,25184096-25184851,25184870-25184927,
25185306-25185376
Length = 296
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 468 QMLISVYVTSKVCRLFKWRTACMSLVFVKSCIPLSDRSFRL 346
QML+++YV SK R KW +++FV ++R + L
Sbjct: 134 QMLMAIYVVSKQWRGDKWLAVPTAIMFVAGTTRYAERIWAL 174
>11_06_0227 +
21475954-21476771,21477215-21479144,21479292-21479426,
21480287-21480392,21480560-21480576
Length = 1001
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +2
Query: 350 LKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDI-----SICDLLDIHPLC 496
L+ L GM +L + +L LQTLDV YT + +IC L + LC
Sbjct: 599 LRQLRYLGMRGTRVAELPVEIGNLMHLQTLDVRYTGLKELPSTICKLSKLMRLC 652
>10_01_0200 + 2171178-2172338
Length = 386
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 158 LPAEMII-LIIKYLDTPTVYNIYNTCKPLREIIT 256
LP E+++ ++I+ D + + CKPLR +IT
Sbjct: 10 LPEELVVEILIRLTDLADLARAASACKPLRRLIT 43
>01_07_0084 +
40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/94 (23%), Positives = 43/94 (45%)
Frame = +2
Query: 329 FKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDLLDIHPLCPTVK 508
FK A +L + S G H + ++ A + L Q + ++ C L ++PL +
Sbjct: 6 FKPEAGALVE-SGGGAHGDSIPAMVAAQQELLHAQVDQLQLLVVAQCRLTGVNPLAQEMA 64
Query: 509 NIAINYIFGKLGMTRMTPEFIEACQNLLAKFENI 610
A++ GK + P+ +++ Q+L A + I
Sbjct: 65 AGALSIKIGKKPRDLLNPKAVKSMQSLFAMKDTI 98
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 347 SLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDIS 463
SL+ LS++G H+L + L SL +DV+ TD+S
Sbjct: 249 SLRFLSVAGCHNLKWATASTSWAQLPSLVAVDVSRTDVS 287
>10_08_0444 +
17971724-17971797,17972119-17972176,17972613-17972708,
17972974-17973000,17973019-17973075,17973604-17973687,
17974304-17974384,17974928-17975071,17975218-17975309,
17975998-17976079,17976818-17977000,17977360-17977438,
17977555-17977613,17978162-17978290,17979188-17979367,
17980312-17980446,17980528-17980602,17980890-17980947,
17981035-17981282,17981594-17981733,17981961-17982132,
17982797-17982887,17983099-17983221,17984951-17985032,
17985715-17985835,17985886-17985915,17986427-17986549
Length = 940
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Frame = +2
Query: 263 VVKNLKFSLNILSTADSLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLD 442
++ N ++++L A L+ +S +L ++ ++S + D
Sbjct: 508 LLNNYDMTISVLKEAGDEANKLQSYFEEKLESNMISFADELLMEHFKDLIKFVRSRVSED 567
Query: 443 -VTYTDISICDLLDIHPLCPTVKNIAINYIFGKLGMTRMTPEFIEACQNLLAKFE 604
+ YT+ + D+ P+ VKN A+ + K + M E + +C NLLA E
Sbjct: 568 LILYTECP--SIADVEPI---VKNFAVTW---KTALELMHNEVVTSCSNLLAGME 614
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = -3
Query: 711 HSDIVYFSDCNLVLFKTCIEKLLYIKLIDDPTKCMFSNFANK 586
H +V F++ L+ + C++ LY ++DDP + MF +ANK
Sbjct: 251 HMLLVIFAE-TLLPYLQCLDSWLYDGILDDPYEEMFF-YANK 290
>12_02_0538 + 20134594-20136042
Length = 482
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 347 SLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYT-DISICDLLDIHPLCPTVKNIAI 520
SLKDL L G+ + + L + KSLQ L + + ++ D++ + C +K+I++
Sbjct: 238 SLKDLRLRGIATVEEIGLRSLLGKCKSLQILCLHFVLGLTDSDMITLSQNCSNLKSISL 296
>11_01_0790 + 6617659-6619593,6619696-6620106
Length = 781
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +2
Query: 287 LNILSTADSLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDI 460
L++L DS ++ ++ +L +L G+ KL + + +L +LQTLD+ T I
Sbjct: 482 LSVLELQDSEISEVPTSIG-NLFNLRYIGLRRTNVCKLPECIENLSNLQTLDIKQTKI 538
>10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782
Length = 379
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 143 PALLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREIITQGVVKNLKF 283
P L +LP ++ I++ L + +Y TC LR++I V N F
Sbjct: 182 PRLTSLPPDLQEDILRRLAVEDIAAMYFTCTGLRDLIAGSEVLNNNF 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,049,529
Number of Sequences: 37544
Number of extensions: 321821
Number of successful extensions: 753
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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