Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0374
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86) 32 0.57
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08) 30 1.7
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_2334| Best HMM Match : p450 (HMM E-Value=0) 29 3.0
SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08) 29 4.0
SB_41133| Best HMM Match : LRR_1 (HMM E-Value=2.2e-09) 29 4.0
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_16196| Best HMM Match : LRR_1 (HMM E-Value=5.7) 29 5.3
SB_15636| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33) 29 5.3
SB_56902| Best HMM Match : NACHT (HMM E-Value=1.5e-10) 28 7.0
SB_54669| Best HMM Match : Tropomodulin (HMM E-Value=0.09) 28 7.0
SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_29771| Best HMM Match : F-box (HMM E-Value=5.6e-08) 28 9.2
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001) 28 9.2
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11) 28 9.2
SB_32218| Best HMM Match : LRR_1 (HMM E-Value=1.8) 28 9.2
>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
Length = 1222
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 143 PALLNLPAEMIILIIKYLDTPTVYNIYNTCK 235
P LP EMI L+I YLD P + +TC+
Sbjct: 99 PYFGRLPPEMIRLLISYLDAPGLSKFISTCR 129
>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
Length = 1555
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +2
Query: 359 LSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDLLDIHPLCPTVKNIAINYIF 532
++ +G+ D +L Q+V KSLQ L +TY +IS I C K+ ++N++F
Sbjct: 1002 VACAGIDDEGMCELAQSVAKNKSLQVLTITYNNISEKGKRAIIDAC--AKSQSLNHLF 1057
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 230 CKPLREIITQGVVKNLKFSLNILSTADSLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQA 409
C+ L +VK L+ + +L L+ DFF+ +L LS +DL+++K +Q
Sbjct: 1870 CQCLARCKQSEIVKVLEKAYCLLPCRVLLQFDFFELCYSTLLGLSYLLSYDLSRSKSLQT 1929
Query: 410 VRHLKSLQTL-DVT 448
V + L+ L D+T
Sbjct: 1930 VGSVSGLRPLGDLT 1943
>SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +2
Query: 347 SLKDLSLS--GMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDLLDIHPLCPTVKNIAI 520
+L++LS++ G++D KL +V KSLQ L +TY +IS I C ++ ++
Sbjct: 1447 NLEELSVACAGVNDEGMCKLALSVGKHKSLQVLTITYNNISEIGKRAIIKAC--AESQSL 1504
Query: 521 NYIF 532
N++F
Sbjct: 1505 NHLF 1508
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 350 LKDLSLS--GMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDLLDIHPLCPTVKNIAIN 523
L++LS++ G+ D L ++V +SLQ L +TY +IS I C K+ ++N
Sbjct: 18 LEELSVACAGVDDEGMCALARSVAKNRSLQVLTITYNNISEVGKRAIIDAC--AKSQSLN 75
Query: 524 YIF 532
++F
Sbjct: 76 HLF 78
>SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 659
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 347 SLKDLSLS--GMHDLTKTKLIQAVRHLKSLQTLDVTYTDIS 463
+L+ LS++ G+ D +L Q+V KSLQ L +TY +IS
Sbjct: 293 NLEQLSVACAGIDDEGMCELAQSVAENKSLQVLTITYNNIS 333
>SB_2334| Best HMM Match : p450 (HMM E-Value=0)
Length = 498
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 545 MTRMTPEFIEACQNLLAKFENIHFVGSSINL--MYSNFSIHVLNKT 676
+ +MTP+ E+C L+ K + G S+++ M+S S+ ++ T
Sbjct: 151 LRQMTPKMRESCDTLMDKIGKVADTGESVDILGMFSPMSLEIILST 196
>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
Length = 607
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 347 SLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTY-TDISICDLLDIHPLCPTVKNIAI 520
S+ LSL +DLT + L + +L+ LDV++ ++ + + CP ++++ +
Sbjct: 224 SITSLSLKSCNDLTNSTLNAFTYNCNALKELDVSFCAGVNDAGIATVSEFCPNLEHLNV 282
>SB_41133| Best HMM Match : LRR_1 (HMM E-Value=2.2e-09)
Length = 539
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 356 DLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDIS 463
DLSL+ ++D T A++ SL+ L ++Y DIS
Sbjct: 241 DLSLNSLNDKNTTPFFIALKGNSSLKELKMSYNDIS 276
>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2532
Score = 28.7 bits (61), Expect = 5.3
Identities = 25/80 (31%), Positives = 38/80 (47%)
Frame = +2
Query: 224 NTCKPLREIITQGVVKNLKFSLNILSTADSLKTDFFKAVAYSLKDLSLSGMHDLTKTKLI 403
N+C+ L+ +I G N+ F +S A S T K L+ + + D L
Sbjct: 1062 NSCR-LKTLILDGCGINM-FGARSISKALSKNTSLEKL------SLACNNIDDEGMCALA 1113
Query: 404 QAVRHLKSLQTLDVTYTDIS 463
+ V KSLQ+LD++Y IS
Sbjct: 1114 KYVTKTKSLQSLDISYNHIS 1133
>SB_16196| Best HMM Match : LRR_1 (HMM E-Value=5.7)
Length = 238
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +2
Query: 359 LSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDLLDIHPLCPTVKNIAINYIF 532
++ +G+ D +L ++V KSLQ L +TY +IS I C K+ ++N++F
Sbjct: 112 VAYAGIDDEGMCELARSVAKNKSLQVLTITYNNISEKGKRAIIKAC--AKSQSLNHLF 167
>SB_15636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1311
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +2
Query: 347 SLKDLSLS--GMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDLLDIHPLCPTVKNIAI 520
+L++LS++ G+ D +L ++V KSLQ L +TY +IS I C ++ ++
Sbjct: 1069 NLEELSVACAGIDDEGMCELARSVAKNKSLQVLTITYNNISEKGKRAIIEAC--ARSQSL 1126
Query: 521 NYIF 532
N++F
Sbjct: 1127 NHLF 1130
>SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33)
Length = 479
Score = 28.7 bits (61), Expect = 5.3
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Frame = +2
Query: 212 YNIYNTCKPLREIITQGV---VKNLKFSLNILSTADSLKT--DFFKAVAYSLK---DLSL 367
+NIYNT + LR + + + L+ +++I +TA LKT D + A LK D+
Sbjct: 94 HNIYNTAQQLRTTVDTYIYNTAQQLRTTVDIYNTAQQLKTTVDIYN-TAQQLKTTVDIYN 152
Query: 368 SGMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDLLDIH 487
+ T + V+ L++ T+D+ T + +DI+
Sbjct: 153 TAQQLRTTVDIYNTVQQLRT--TVDIYNTVQQLRTTVDIY 190
>SB_56902| Best HMM Match : NACHT (HMM E-Value=1.5e-10)
Length = 1037
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = +2
Query: 347 SLKDLSLS--GMHDLTKTKLIQAVRHLKSLQTLDVTYTDIS 463
+L++LS++ G+ D +L ++V KSLQ L +TY +IS
Sbjct: 864 NLEELSVACAGIDDEGMCELARSVAKNKSLQVLTITYNNIS 904
>SB_54669| Best HMM Match : Tropomodulin (HMM E-Value=0.09)
Length = 697
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +2
Query: 359 LSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDLLDIHPLCPTVKNIAINYIF 532
++ +G+ D L Q+V +SLQ L +TY +IS I C ++ ++N++F
Sbjct: 563 VACAGIDDEGMCALAQSVAENRSLQVLTITYNNISEVGKRAIIEAC--ARSQSLNHLF 618
>SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1471
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +2
Query: 359 LSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDLLDIHPLCPTVKNIAINYIF 532
++ +G+ D L ++V KSLQ L +TY +IS DI C ++ ++N +F
Sbjct: 1349 VACAGIDDDGMCALARSVAKNKSLQVLTITYNNISEKGKRDIIKAC--ARSQSLNQLF 1404
>SB_29771| Best HMM Match : F-box (HMM E-Value=5.6e-08)
Length = 210
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 149 LLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREI 250
L+ LP+ ++ I YLD V + + CK LR++
Sbjct: 91 LVRLPSNTVVHIASYLDLIDVSRLGSVCKFLRKV 124
>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
Length = 909
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 158 LPAEMIILIIKYLDTPTVYNIYNTCKPLREI 250
LP E++ I LD ++N+ TCK LRE+
Sbjct: 450 LPVEILQTIAGMLDGFGLWNLSRTCKLLREV 480
>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
Length = 335
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 350 LKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDLLDIHPLCPTVKNIAI 520
L+ LSL+ +LT T ++ + K L+ LD+ TD ++ + + + T+ N I
Sbjct: 278 LQGLSLAKCRELTSTGIVTIAENCKQLKHLDI--TDCTLVNTQGLDTIRTTLPNCEI 332
>SB_32218| Best HMM Match : LRR_1 (HMM E-Value=1.8)
Length = 194
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +2
Query: 359 LSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDLLDIHPLCPTVKNIAINYIF 532
++ +G+ D +L ++V KSLQ L +TY +IS I C ++ ++N++F
Sbjct: 68 VAYAGIDDEGMCELARSVAKNKSLQVLTITYNNISEIGKRAIIKAC--AESQSLNHLF 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,358,096
Number of Sequences: 59808
Number of extensions: 425721
Number of successful extensions: 926
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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