Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0374
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067220-9|AAC16977.1|  305|Caenorhabditis elegans Hypothetical ...    32   0.50 
Z92781-3|CAB07182.1|  326|Caenorhabditis elegans Hypothetical pr...    31   0.87 
U41279-11|AAK31420.1|  146|Caenorhabditis elegans Hypothetical p...    30   2.0  
AF024490-2|AAB70309.1|  338|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z81593-5|CAB04743.1|  332|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z81113-4|CAB03281.2|  388|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z19152-9|CAC35809.1|  364|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL110477-3|CAB54326.1|  314|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF077546-2|AAC26313.2|  293|Caenorhabditis elegans Hypothetical ...    28   6.1  
AC087081-15|AAK66031.1|  267|Caenorhabditis elegans Hypothetical...    28   6.1  
U40419-6|AAL02445.2|  408|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U23516-5|AAG38885.1|  449|Caenorhabditis elegans Glycosylation r...    28   8.1  
AF082010-1|AAD03022.1|  449|Caenorhabditis elegans UDP-N-acetylg...    28   8.1  

>AF067220-9|AAC16977.1|  305|Caenorhabditis elegans Hypothetical
           protein C33E10.2 protein.
          Length = 305

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
 Frame = +2

Query: 149 LLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREIITQGV-VKNLKFSLNILS-TADSLKT 322
           L+ LP EM+  IIK ++      +   C+ LR+I+ +   V+++  +++ LS T  +L  
Sbjct: 18  LIELPTEMLTEIIKRVNPINRLALRKVCRILRKIVDENPGVESVTSAVDDLSLTTRNLTG 77

Query: 323 DFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDV 445
           +F   V Y ++        D   TK I+  R +  L  L V
Sbjct: 78  NF--CVTYGIQGSGCLISSDYCCTKYIEKPRLMMKLDDLTV 116


>Z92781-3|CAB07182.1|  326|Caenorhabditis elegans Hypothetical
           protein F09C3.4 protein.
          Length = 326

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
 Frame = +2

Query: 134 EESPALL--NLPAEMIILIIKYLDTPTVYNIYNTCKPLREIIT-QGV-VKNLKFSLNILS 301
           EE P+LL  +LP ++++ I K LDT T   +       R+II  QG  VK +K   + + 
Sbjct: 23  EERPSLLLLDLPIDILLAITKQLDTETRMIVRKVSPAFRDIIDYQGSGVKTMKIGKDCI- 81

Query: 302 TADSLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDISI-CDLL 478
           T D  + ++ + V  S   L +   H   KTK+ ++ + L   Q L +      I    L
Sbjct: 82  TIDWKRIEYREGVHCSC--LIIYQGH--IKTKIYESPQSL-MFQDLSILLKSPRIRLSWL 136

Query: 479 DIHPLCPTVKN 511
           D+ P+  T  N
Sbjct: 137 DLAPISCTSYN 147


>U41279-11|AAK31420.1|  146|Caenorhabditis elegans Hypothetical
           protein C17C3.6 protein.
          Length = 146

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 143 PALLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREII 253
           P+L ++P E+I  I+ Y+D   +  I   C+ LR ++
Sbjct: 34  PSLSDMPIEVIHNIVDYVDPINILVIRKVCRKLRNVL 70


>AF024490-2|AAB70309.1|  338|Caenorhabditis elegans Hypothetical
           protein C02H6.2 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 17/222 (7%)
 Frame = +2

Query: 119 TKVKM-EESPALLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREIITQGVVKNLKFSLNI 295
           T VK   E P   N+P E++  ++            N  +P+  ++ Q V + L+  +N 
Sbjct: 24  TSVKFPREEPTFSNMPIEILTEVV------------NKLEPINRLVLQKVSRKLREFVNN 71

Query: 296 LSTADS-LKTDFFKAVAYSLKD---LSLSGMHDLTKTKLIQAVRHLKSLQTLD-VTYTDI 460
           ++   + L+ DF    A  + D   +  S      + KL+   +H    +T++   Y+DI
Sbjct: 72  MNPGIAFLRIDFTADWARLMVDKYEIICSKTGKSCQLKLLDEEKHELRKKTIEKYYYSDI 131

Query: 461 SICDLLDIHPLCPTVKNIAINYIFGKL---GMTRMTPEFIEACQNLLAKF-----ENIHF 616
            + D   I     T   + +N ++  L   G TR+    ++  +N+L        ++IH 
Sbjct: 132 ILNDWRAI----ITKPKLRLNELYICLLSGGRTRLNS--LQDIENILQTMKPLPVKHIHL 185

Query: 617 VG---SSINLMYSNFSIHVLNKTKLQSLKYTISECDYVCTTD 733
           +G   S + +++ +F   VL   +L S + T    D V T++
Sbjct: 186 LGYLFSELPVVFQHFQPGVLENIRLHSYQVTDDLTDLVTTSE 227


>Z81593-5|CAB04743.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.5 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = -3

Query: 336 ALKKSVFKESAVDSMFRENFKFFTTPCVIISLKGLQVLYIL*TVGVSKYFMINIIISAGK 157
           ++K S+        +F  +  FFTTP V+  +     L +L  +GVS    +  ++  G 
Sbjct: 50  SVKWSMMNVHVFSCIFDLSLSFFTTPYVLFPVLAGYPLGVLKEIGVSVEAQVYFVVLVGA 109

Query: 156 FNNAGLSSI 130
           +    +S +
Sbjct: 110 YMMVAISIV 118


>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 506 KNIAINYIFGKLGMTRMTPEFIEACQNLLAKFEN 607
           +++A+ YI GKL  ++  PE+I+ C    A  EN
Sbjct: 135 EDVAVAYI-GKLDASQTRPEYIDVCVATKANIEN 167


>Z81113-4|CAB03281.2|  388|Caenorhabditis elegans Hypothetical
           protein T03F6.4 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 131 MEESPALLNLPAEMIILIIKYLDTPTVY 214
           M E P LLNLP E+++ +I+ L    ++
Sbjct: 1   MREEPTLLNLPNEVLLKVIRNLPRHDIF 28


>Z19152-9|CAC35809.1|  364|Caenorhabditis elegans Hypothetical
           protein B0464.9 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 553 NDTRIH*SMPEFIGKI*KHTFCWIIDQFNVQQFFNTRFE 669
           N T    SMP  I ++ +H + W ID    +Q++   FE
Sbjct: 232 NPTAARVSMPSQIREVSEHEYTWRIDLTTTEQYWKGWFE 270


>AL110477-3|CAB54326.1|  314|Caenorhabditis elegans Hypothetical
           protein Y113G7B.4 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 101 NAVSNPTKVKMEESPALLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREII 253
           N       +K+   P+L  +P EM+  I   +D  +   +   C+ LR +I
Sbjct: 4   NLADELDSMKISGPPSLFEMPTEMVYKIAGKVDPFSRLTVRKVCRNLRNVI 54


>AF077546-2|AAC26313.2|  293|Caenorhabditis elegans Hypothetical
           protein T08E11.7 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 125 VKMEESPALLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREII 253
           +K+ +SP LLN+P  +   I++ L+   +      CK LR  +
Sbjct: 2   LKLHKSPTLLNMPIGVANQILEKLELLDLLTSRKVCKSLRAAV 44


>AC087081-15|AAK66031.1|  267|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.4 protein.
          Length = 267

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +2

Query: 110 SNPTKVKMEESPALLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREIITQGVVKNLKFSL 289
           + P      ESP LLN+P +++  + + L    ++   N C+ LR  +    +   K SL
Sbjct: 14  TKPPTTSHLESP-LLNMPLDIVNQVFEKLSPMDLWTCRNVCQSLRRAVDGFGIYFPKISL 72

Query: 290 NI 295
            I
Sbjct: 73  QI 74


>U40419-6|AAL02445.2|  408|Caenorhabditis elegans Hypothetical
           protein C27F2.7 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 101 NAVSNPTKVKMEESPALLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREI 250
           N +    K     S   + LP   I  I+ +LD  ++ N+  TC  LR++
Sbjct: 111 NLLFQSEKNSSRRSFEFMQLPDTDICQIMSFLDAQSLLNLSQTCSHLRQL 160


>U23516-5|AAG38885.1|  449|Caenorhabditis elegans Glycosylation
           related protein 13 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 148 VIKFTCRNDNINHKIFRHADRL*YIQHL*TFKGN 249
           ++   C N+N+ +++ +  D++ YI+HL   K N
Sbjct: 126 IVTQDCDNENVKNEVKKFGDKVEYIKHLAGDKAN 159


>AF082010-1|AAD03022.1|  449|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 148 VIKFTCRNDNINHKIFRHADRL*YIQHL*TFKGN 249
           ++   C N+N+ +++ +  D++ YI+HL   K N
Sbjct: 126 IVTQDCDNENVKNEVKKFGDKVEYIKHLAGDKAN 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,328,032
Number of Sequences: 27780
Number of extensions: 340239
Number of successful extensions: 848
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)