Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0374
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.57 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   7.0  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   9.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   9.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   9.3  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 182 IIKYLDTPTVYNIYNTCKP 238
           I+++ +TP V+   NTC+P
Sbjct: 97  IVQFRNTPEVHQAINTCQP 115


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 635 LMYSNFSIHVLNKTKLQSLKYTISE 709
           L   NF+I +LNKT L  ++ +  E
Sbjct: 477 LKKGNFTIEILNKTVLAVVRQSEEE 501


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -3

Query: 519 MAIFLTVGHRG*MSSKSQMLISVYVTSKVCRL 424
           +A+F+  G  G  SS + ++  +Y+   + R+
Sbjct: 77  LAVFIVAGAVGVFSSPTILISYIYILMAILRM 108


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 157 FTCRNDNINHKIFRHADRL 213
           +T + DNIN     H+DRL
Sbjct: 25  YTSKFDNINVDEILHSDRL 43


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 261 PCVIISLKGLQVLYIL*TVGVSKYFMINIIISAGKF 154
           PCV IS   +   Y+    G      INI++S   F
Sbjct: 245 PCVSISYLSVLAFYLPADSGEKIALCINILLSQTMF 280


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 157 FTCRNDNINHKIFRHADRL 213
           +T + DNIN     H+DRL
Sbjct: 25  YTSKFDNINVDEILHSDRL 43


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 157 FTCRNDNINHKIFRHADRL 213
           +T + DNIN     H+DRL
Sbjct: 25  YTSKFDNINVDEILHSDRL 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,266
Number of Sequences: 438
Number of extensions: 4340
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)