Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0374
(746 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g21900.1 68418.m02539 expressed protein 32 0.46
At2g06030.1 68415.m00660 expressed protein 30 1.4
At5g01720.1 68418.m00090 F-box family protein (FBL3) contains si... 30 1.9
At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR... 29 3.3
At5g40560.1 68418.m04922 DegP protease, putative contains simila... 29 4.3
At2g20950.4 68415.m02474 expressed protein 29 4.3
At2g20950.3 68415.m02473 expressed protein 29 4.3
At2g20950.2 68415.m02472 expressed protein 29 4.3
At2g20950.1 68415.m02471 expressed protein 29 4.3
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr... 28 5.7
At1g77890.1 68414.m09078 expressed protein 28 5.7
At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR... 28 5.7
At4g09400.1 68417.m01549 hypothetical protein similar to At3g453... 28 7.6
At4g03930.1 68417.m00556 pectin methylesterase, putative similar... 28 7.6
At2g17020.1 68415.m01962 F-box family protein (FBL10) contains s... 28 7.6
At1g60570.1 68414.m06819 kelch repeat-containing F-box family pr... 27 10.0
At1g51550.1 68414.m05802 F-box family protein similar to F-box Z... 27 10.0
>At5g21900.1 68418.m02539 expressed protein
Length = 544
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 293 ILSTADSLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTD 457
++S D + FF + L DLSL+ +++T + R+ K L+ LD+T D
Sbjct: 345 LVSVNDGVVRSFFMFRSSILTDLSLANCNEVTDECMWHIGRYCKKLEALDITDLD 399
>At2g06030.1 68415.m00660 expressed protein
Length = 243
Score = 30.3 bits (65), Expect = 1.4
Identities = 28/116 (24%), Positives = 51/116 (43%)
Frame = +2
Query: 239 LREIITQGVVKNLKFSLNILSTADSLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRH 418
L+E +T + LK L + ++ D F + SLK+LSL+ + + + +H
Sbjct: 115 LKEFVTARG-QTLK-QLILTNSRDEAVAAFVETAGGSLKELSLNNVKKVGHNTALALAKH 172
Query: 419 LKSLQTLDVTYTDISICDLLDIHPLCPTVKNIAINYIFGKLGMTRMTPEFIEACQN 586
LQ LD+++ DLL V N + + G +++T F++ N
Sbjct: 173 SDKLQILDISWCREMSNDLLGY-----IVDNSSSLKVLKVFGCSQVTDVFVKGHSN 223
>At5g01720.1 68418.m00090 F-box family protein (FBL3) contains
similarity to leucine-rich repeats containing F-box
protein FBL3 GI:5919219 from [Homo sapiens]
Length = 665
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +2
Query: 302 TADSLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVT----YTDISIC 469
T D LK + SLK++SLS +T L V LK L+ LD+T + +SI
Sbjct: 317 TPDGLKA--IGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLDITCCRKLSRVSIT 374
Query: 470 DLLDIHPLCPTVK 508
+ + PL ++K
Sbjct: 375 QIANSCPLLVSLK 387
>At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1163
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/86 (29%), Positives = 46/86 (53%)
Frame = +2
Query: 296 LSTADSLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQTLDVTYTDISICDL 475
LS +++L+ ++A +L++L G L K + +++ +L L TLDV+Y + +
Sbjct: 668 LSDSENLEQLPDLSMAVNLEELITQGCKRLKK--IPESISYLTRLTTLDVSYCE-ELASY 724
Query: 476 LDIHPLCPTVKNIAINYIFGKLGMTR 553
+ I L + + IA+ Y GK TR
Sbjct: 725 ITIRELNRSGRQIAL-YFSGKEVETR 749
>At5g40560.1 68418.m04922 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 410
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 638 MYSNFSIHVLNKTKLQSLKYTISECDYVCTTDVSI 742
MY + ++ +NK K+++LK+ + CT D+ +
Sbjct: 326 MYKHLKVNSVNKVKVENLKHLCELIEKCCTKDLRL 360
>At2g20950.4 68415.m02474 expressed protein
Length = 530
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/59 (20%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 311 SLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQT--LDVTYTDISICDLLD 481
S ++ + +++A ++ +L + + DLTKT++ + +K + + +DV++ ++ +L +
Sbjct: 383 STRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAE 441
>At2g20950.3 68415.m02473 expressed protein
Length = 505
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/59 (20%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 311 SLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQT--LDVTYTDISICDLLD 481
S ++ + +++A ++ +L + + DLTKT++ + +K + + +DV++ ++ +L +
Sbjct: 358 STRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAE 416
>At2g20950.2 68415.m02472 expressed protein
Length = 503
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/59 (20%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 311 SLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQT--LDVTYTDISICDLLD 481
S ++ + +++A ++ +L + + DLTKT++ + +K + + +DV++ ++ +L +
Sbjct: 356 STRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAE 414
>At2g20950.1 68415.m02471 expressed protein
Length = 520
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/59 (20%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 311 SLKTDFFKAVAYSLKDLSLSGMHDLTKTKLIQAVRHLKSLQT--LDVTYTDISICDLLD 481
S ++ + +++A ++ +L + + DLTKT++ + +K + + +DV++ ++ +L +
Sbjct: 373 STRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAE 431
>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
protein / F-box family protein contains similarity to
F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
contains Pfam profiles PF00514:
Armadillo/beta-catenin-like repeat, PF00646: F-box
domain
Length = 930
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 308 DSLKTDFFKAVAY---SLKDLSLSGMHDLTKTKLIQAVRHLKSLQTL 439
+ + +D KAVA+ LK L LSG+ D+T + +H L L
Sbjct: 171 ERITSDAIKAVAFCCPKLKKLRLSGIRDVTSEAIEALAKHCPQLNDL 217
>At1g77890.1 68414.m09078 expressed protein
Length = 460
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 80 KIC*SLINAVSNPTKVKMEESPALLNLPAEMIILIIKYLDTPTVYNI 220
+IC +L+ NP V +E A L +++ L++ L P ++N+
Sbjct: 180 QICNALLPQGLNPLSVPPKELAASLGYMVQLLNLVVHKLSVPALHNL 226
>At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 997
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = +2
Query: 380 DLTKTKLIQAVRHL-KSLQTLDVTYTDISI 466
DL+ ++ ++++ HL SLQTLD++ TDI +
Sbjct: 744 DLSGSRNLKSITHLPSSLQTLDLSSTDIEM 773
>At4g09400.1 68417.m01549 hypothetical protein similar to At3g45350,
At2g14330
Length = 513
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 542 GMTRMTPEFIEACQNLLAKFENIH 613
G T + PE EACQ + K +N H
Sbjct: 392 GQTNLFPEMHEACQMFIQKVDNQH 415
>At4g03930.1 68417.m00556 pectin methylesterase, putative similar to
pectin methylesterase GI:1617588 from [Lycopersicon
esculentum]
Length = 535
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 557 TPEFIEACQNLLAKFENIHFVGSSINLMYSNFSIHVLNKTKLQSLKYTISECDYVCTTDV 736
T +FI C N A F+ V N+ SNF +TK ++I C+ ++D+
Sbjct: 373 TVDFI--CGNAAAVFQFCQIVARQPNMGQSNFITAQSRETKDDKSGFSIQNCNITASSDL 430
>At2g17020.1 68415.m01962 F-box family protein (FBL10) contains
similarity to F-box protein Partner of Paired
GI:10441427 from [Drosophila melanogaster]
Length = 656
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 158 LPAEMIILIIKYLDTPTVYNIYNTCKPLREIITQ 259
LPA ++ I+ LD ++ ++ +TCK L+ +T+
Sbjct: 26 LPAALLETIMTKLDVASLCSLASTCKTLKSCVTR 59
>At1g60570.1 68414.m06819 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 381
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 122 KVKMEESPALLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREIITQGVV 268
K+ +EE + +LP E+I+ I+ + + ++ CK ++T G +
Sbjct: 13 KLPVEEPTLIPSLPEELILSILARVSRLSYRSLSLVCKRFHSLLTSGEI 61
>At1g51550.1 68414.m05802 F-box family protein similar to F-box
ZEITLUPE/FKF/LKP/ADAGIO proteins e.g. GI:13487068 from
[Arabidopsis thaliana]
Length = 478
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 110 SNPTKVKMEESPALLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREI 250
S+P SP ++NLP + ++ I+ L ++ + TCK + +
Sbjct: 9 SSPPSTSQSSSP-IINLPDDHLLTILLLLPVDSILSFSMTCKRYKSL 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,771,908
Number of Sequences: 28952
Number of extensions: 293832
Number of successful extensions: 699
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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