Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0372
(364 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.16
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13) 28 2.0
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 27 3.4
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1) 27 3.4
SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017) 27 4.6
SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9) 27 6.0
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17) 26 8.0
SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4) 26 8.0
>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 31.9 bits (69), Expect = 0.16
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 7 LSTFVSERFTKMAKR---TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 156
+ST S + K+ R T+ GIT T Y +S +K+V + T+ A TC
Sbjct: 1 MSTHYSSPYKKLVPRQLTTRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITC 53
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 7 LSTFVSERFTKMAKR---TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 156
+ST S + K+ R T+ IT T Y +S +K+V + T+ + TC
Sbjct: 28 MSTHYSSSYKKLVPRQLTTRWASITCMMSTHYSSSYKKLVPRSLTTRWSGITC 80
>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 27 EVYQNGQTYQKGWNYWQIWHTLRCL 101
+ YQ + GW WQIW LR +
Sbjct: 644 DTYQGRPLMKYGWLKWQIWRALRLI 668
>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
Length = 351
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 94 GASLRKMVKKMEVTQHAKYTCSFCGK 171
G +K ++ E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234
>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/76 (18%), Positives = 31/76 (40%)
Frame = -3
Query: 326 VYYLNYFTSRNLLTADLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVY 147
+ + + F N A + + V + +L+ +++ AS + E +
Sbjct: 122 ILHHSIFWGNNFWFAAVTPPSDVTNKPSSASRGLLVLLFSQAAALRKKIAASCWEKESEF 181
Query: 146 FACWVTSIFLTILRRE 99
+ CWV S F+T + +
Sbjct: 182 YECWVASFFITTAKTQ 197
>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 173 SLPQNEQVYFACWVTSIFLTIL 108
S P + V FA W SIFLTI+
Sbjct: 133 SAPTSLSVIFAAWFLSIFLTII 154
>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 300
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 156 LILW*GCYETFL-CRHLVL*AMQEDCSRRSLGILHYCCLIMQICCQEV 296
++L GCY L C H+V M C + +L C++M ICC +V
Sbjct: 127 VVLSLGCYVVMLLCHHVV---MSLSCY---IDMLLCRCVVMSICCYDV 168
>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
Length = 298
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 151 TCSFCGKDAMKRS 189
TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255
>SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)
Length = 893
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/56 (26%), Positives = 21/56 (37%)
Frame = -3
Query: 281 DLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLT 114
D H V EN + T RL D + + + + + VYF FLT
Sbjct: 670 DKHSAEHVAENVKPSCKTGSTRRLLDTLVAMQLLVKEMDSDPPVYFNSQTAEAFLT 725
>SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)
Length = 292
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 290 LTADLHDEAAVVENTQAP 237
+TADLHD A VV N + P
Sbjct: 247 ITADLHDTARVVVNLRTP 264
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 290 LTADLHDEAAVVENTQAP 237
+TADLHD A VV N + P
Sbjct: 972 ITADLHDTARVVVNLRTP 989
>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
Length = 815
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 27 EVYQNGQTYQKGWNYWQIWHTLRCL 101
+VY+N + G WQIW LR +
Sbjct: 643 DVYRNEPLQRYGMLKWQIWRALRLI 667
>SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)
Length = 438
Score = 26.2 bits (55), Expect = 8.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 244 KLLLLQSSCIAYKTRCRHKNVS*HPYHKMSKYTLRVGL 131
+++ LQS YK C KNV HP Y LR+GL
Sbjct: 110 RVVTLQSDSYPYK--CYIKNVLSHPQESQESY-LRLGL 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,787,432
Number of Sequences: 59808
Number of extensions: 228702
Number of successful extensions: 635
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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