Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0371
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    53   7e-06
UniRef50_UPI000023D052 Cluster: hypothetical protein FG01911.1; ...    36   0.85 
UniRef50_Q9U489 Cluster: Protein lin-41; n=3; Caenorhabditis|Rep...    35   2.0  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 52.8 bits (121), Expect = 7e-06
 Identities = 25/32 (78%), Positives = 25/32 (78%)
 Frame = -3

Query: 108 KTPKLLNKINLKQTKGICPAGDT*KEKQNCYF 13
           K PK L KINLKQTKGI   GDT KEKQNCYF
Sbjct: 36  KRPKHLYKINLKQTKGIRQTGDTSKEKQNCYF 67


>UniRef50_UPI000023D052 Cluster: hypothetical protein FG01911.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG01911.1 - Gibberella zeae PH-1
          Length = 929

 Score = 35.9 bits (79), Expect = 0.85
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 538 YKGDSEAVVLCGVPDLVRPSSNHFRSMLAWPIE--LQTIMR*HQFY 407
           Y+ D EA +L  VPDL+ P  +H + +  W +   L  I R H++Y
Sbjct: 131 YRMDEEAGMLAQVPDLLSPFLHHSKELHTWAVSTVLPLIRRNHEYY 176


>UniRef50_Q9U489 Cluster: Protein lin-41; n=3; Caenorhabditis|Rep:
           Protein lin-41 - Caenorhabditis elegans
          Length = 1147

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +2

Query: 188 CYVITTEPFIRLARNLVSM*KIHVLNG*ANIYMSVGLPTPVAGALMMRIFVRVRNNDVNI 367
           CY +T   + R A  L         N  + +Y+S  LP+P  GALM        NN +N 
Sbjct: 138 CYQMTPSSYDRRACKLCGAVSTATANFTSQMYLSPTLPSPPRGALMSDCSTPTMNNHINS 197

Query: 368 KCP 376
             P
Sbjct: 198 STP 200


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,845,422
Number of Sequences: 1657284
Number of extensions: 12144269
Number of successful extensions: 23579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23574
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)