Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0371
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.8  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   5.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.1  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 391 TRPLRWAFNINIIISHPHKDSHH 323
           T+PL  A  +N++ S+  + SHH
Sbjct: 777 TKPLVDAQTMNLLRSYHQQQSHH 799


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +1

Query: 283 YECWTPYTSCWG 318
           Y+CW  +   WG
Sbjct: 188 YDCWATFQEPWG 199


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 6   VPKNNNFVFPFMCPPPGRFLLFVLSLFY 89
           VP N   +F F    PG +L     LF+
Sbjct: 649 VPNNGYVIFRFRADNPGYWLFHCHFLFH 676


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,591
Number of Sequences: 336
Number of extensions: 3180
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)