Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0371
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   3.1  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    26   4.1  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   9.5  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 275 NIYMSVGLPTPVAGALMM 328
           +IY SV +PTP+ G+L++
Sbjct: 293 DIYASVSIPTPLGGSLLL 310


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 650 AHSLLTHIVFHASLQGQ*KTKELTNSR 570
           A +L+T  + H S Q + KTK+ TNSR
Sbjct: 44  ADALITSNIGHRSRQRKKKTKKATNSR 70


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 420 YLIIVCNSMGQASIERKWFELGRTRSGT 503
           YL ++C S G+  + +KW    +T  GT
Sbjct: 203 YLYVLCTSEGEVLLPQKWL-ASKTARGT 229


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 132  GRLRSASKKTPKLLNKINLKQ 70
            G L+   KK  KLL K+NL+Q
Sbjct: 1737 GFLKETVKKQEKLLKKLNLRQ 1757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,712
Number of Sequences: 5004
Number of extensions: 53602
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)