Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0371
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)                31   1.1  
SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)                     28   7.6  
SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_10433| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)                28   7.6  

>SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)
          Length = 607

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 633 TYRLSRKLTRAIKNKRTNKFSLKFSIYVPTALTKVIVKQ*CY 508
           TY ++ K+T  + NK TNK + K +  V   +T  + K   Y
Sbjct: 362 TYNVTNKVTNEVTNKMTNKVTNKMTNKVTNKVTNKVTKMVTY 403



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 633 TYRLSRKLTRAIKNKRTNKFSLKFSIYVPTALTKVIVKQ 517
           T +++ KLT  + NK+TNK + K +  V   +TK +  +
Sbjct: 146 TNKVANKLTNNVTNKKTNKMTNKVTYNVTNKVTKEVTNK 184



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 633 TYRLSRKLTRAIKNKRTNKFSLKFSIYVPTALTKVIVKQ 517
           TY+++ K+T  + NK TNK + K +  V   +T  +  +
Sbjct: 430 TYKVANKVTNKVANKVTNKVANKVTYKVANKVTNKVTNK 468



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 633 TYRLSRKLTRAIKNKRTNKFSLKFSIYVPTALT 535
           TY ++ K+T+ + NK TNK + K +  V   +T
Sbjct: 170 TYNVTNKVTKEVTNKMTNKVTNKATYKVTNKVT 202



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 633 TYRLSRKLTRAIKNKRTNKFSLKFSIYVPTALTKVIVKQ 517
           TY+++ K+T  + NK TNK + K +  V   +T  +  +
Sbjct: 506 TYKVTNKVTYKVANKVTNKVTNKVTYNVTNKVTNEVTNK 544


>SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 238 YQVSSQSDEWFSSYNVTPVKTTVDLLY 158
           Y  S+   EW  SY VT +KT +D  Y
Sbjct: 216 YPASALQTEWMPSYKVTLIKTLIDNFY 242


>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1492

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = -2

Query: 412  FYSLTSCTRPLRWAFNINIIISHPHKDSHH*R---PSNW---CRES 293
            +Y+     +PL +A+N+  I+ HP K  H  R   P  W   CR S
Sbjct: 1262 YYADRGLWKPLSFAYNVRRILHHPMKAYHFVRYPLPKPWKTDCRPS 1307


>SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 250 FLHGYQVSSQSDEWFSSYNVTPVKTTVDLLYNISIN*LTR 131
           ++H Y  +SQ+  +  +YN T   T     YN S +  TR
Sbjct: 69  YVHTYNTTSQATRYVHTYNTTSQATRYVHTYNTSTSQATR 108


>SB_10433| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)
          Length = 212

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -2

Query: 355 IISHPHKDSHH*RPSNWCRESNTHINI-SLSIKYMYFLHGYQVSSQSDEWFSSYNVTPVK 179
           ++ H    + H   +N   ++  H++  + + +   ++H Y  +SQ+     +YN T   
Sbjct: 48  LVQHQATPTRHVHTNNTTSQATRHVHTYNTTSQASRYVHTYNTTSQATRHVHTYNTTSQA 107

Query: 178 TTVDLLYN 155
           T     YN
Sbjct: 108 TRYVHTYN 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,730,494
Number of Sequences: 59808
Number of extensions: 395593
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)