Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0371
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1755|AAF52850.1|  734|Drosophila melanogaster CG13127-P...    29   5.5  

>AE014134-1755|AAF52850.1|  734|Drosophila melanogaster CG13127-PA
           protein.
          Length = 734

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -2

Query: 235 QVSSQSDEWFSSYNVTPVKTTVDLLYNISIN*LTRQTS*CLKENT*TFE*NKLKTNKRNL 56
           Q+ ++   WF+ Y + P K  V+ L    +N ++ +    L++N    E ++      NL
Sbjct: 205 QIPNEGSRWFAQYKLCPAKRVVNKLLRDQLNGISLKWDDNLEDNAPVCETHRFLKKVENL 264


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,430,371
Number of Sequences: 53049
Number of extensions: 568622
Number of successful extensions: 903
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)