Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0371
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    35   0.058
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    35   0.058
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    35   0.058
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    35   0.058

>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +2

Query: 188 CYVITTEPFIRLARNLVSM*KIHVLNG*ANIYMSVGLPTPVAGALMMRIFVRVRNNDVNI 367
           CY +T   + R A  L         N  + +Y+S  LP+P  GALM        NN +N 
Sbjct: 138 CYQMTPSSYDRRACKLCGAVSTATANFTSQMYLSPTLPSPPRGALMSDCSTPTMNNHINS 197

Query: 368 KCP 376
             P
Sbjct: 198 STP 200


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +2

Query: 188 CYVITTEPFIRLARNLVSM*KIHVLNG*ANIYMSVGLPTPVAGALMMRIFVRVRNNDVNI 367
           CY +T   + R A  L         N  + +Y+S  LP+P  GALM        NN +N 
Sbjct: 138 CYQMTPSSYDRRACKLCGAVSTATANFTSQMYLSPTLPSPPRGALMSDCSTPTMNNHINS 197

Query: 368 KCP 376
             P
Sbjct: 198 STP 200


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +2

Query: 188 CYVITTEPFIRLARNLVSM*KIHVLNG*ANIYMSVGLPTPVAGALMMRIFVRVRNNDVNI 367
           CY +T   + R A  L         N  + +Y+S  LP+P  GALM        NN +N 
Sbjct: 138 CYQMTPSSYDRRACKLCGAVSTATANFTSQMYLSPTLPSPPRGALMSDCSTPTMNNHINS 197

Query: 368 KCP 376
             P
Sbjct: 198 STP 200


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +2

Query: 188 CYVITTEPFIRLARNLVSM*KIHVLNG*ANIYMSVGLPTPVAGALMMRIFVRVRNNDVNI 367
           CY +T   + R A  L         N  + +Y+S  LP+P  GALM        NN +N 
Sbjct: 138 CYQMTPSSYDRRACKLCGAVSTATANFTSQMYLSPTLPSPPRGALMSDCSTPTMNNHINS 197

Query: 368 KCP 376
             P
Sbjct: 198 STP 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,701,732
Number of Sequences: 27780
Number of extensions: 295653
Number of successful extensions: 573
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)