Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0369
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    30   0.27 
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       29   0.82 
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    27   2.5  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   5.8  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    26   5.8  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   7.6  

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = -3

Query: 396 SSVPFHELFLRLDNRRF-KLVDRN-SY-LQAGNEA*SIV*WADNPSRRTVHP 250
           S+ P H L L LDN +F +L   N SY L A ++  S+   +++PSR  +HP
Sbjct: 706 SAYPHHNLALNLDNTQFGELGTSNISYPLSAPSDVGSLPRASNSPSRPVMHP 757


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 477 RSTNRKRSHIAGRWSVGRRTRRSPSPNPHHGS 572
           RS  R RS   GR    RR+RR PSP+  H S
Sbjct: 197 RSRRRSRSRRPGRSRSRRRSRR-PSPSAEHNS 227


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -2

Query: 232 PAVVQFCANRHFLHPLWCAVCCRSIRCPPGRLTSRISPGDRRT 104
           P++ QFC N  F+  L          CPP RLT   S   R T
Sbjct: 364 PSLSQFCENEGFIKRLAKKAKNFYEICPPERLTRFYSRASRET 406


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 371 FSGLITEDSNSSTGIAICKPATKPEVSYSGQ 279
           F+  ITE+  S  GIA  +P TK ++S+  +
Sbjct: 46  FASPITEEIPSPDGIATPEPETKKKLSFGAR 76


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 196 ENDGWRRTEPPPGPILELRMYCPPG 270
           E +G+R + PPP  +L  R+  P G
Sbjct: 14  EPEGFRPSTPPPKEVLHTRVIVPNG 38


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = +3

Query: 462 SEGRSRSTNRKRSHIAGRWSVGRRTRRSPSPNPHHGS*TKQHFLQKTELHP*HGHTLLLQ 641
           S  RSRST+    H   R     RTR     N  HGS  ++H   +T L   H H+    
Sbjct: 122 STSRSRSTSPANRH---RRKEKERTRS----NHRHGS-HRRHEPYRTHLSRHHRHSTTNY 173

Query: 642 HDKKN 656
           H K++
Sbjct: 174 HSKRD 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,146
Number of Sequences: 5004
Number of extensions: 67811
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)