Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0369
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577... 30 1.5
03_01_0155 - 1239184-1239491,1240414-1240812,1241017-1241380 29 4.5
08_01_0041 - 290333-290698,290854-291861 28 7.9
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 28 7.9
04_04_0138 + 23067885-23068245,23068393-23068634 28 7.9
03_05_1050 - 29966031-29966076,29966180-29966232,29966420-299668... 28 7.9
03_05_0220 + 22063411-22063468,22063535-22063545,22064478-220646... 28 7.9
02_02_0353 + 9276316-9276518,9276915-9277314 28 7.9
>04_03_0847 -
20254736-20254933,20256127-20256201,20257538-20257717,
20257802-20257869,20258563-20259125,20259198-20259235
Length = 373
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = +1
Query: 172 IPRTIKDAENDGWRRTEPPPGPILELRMYCPPGRVVCPLYDTSGFV-------AGLQIAI 330
I R + + ND PPP P PP RVV + D G++ A LQ A+
Sbjct: 11 IGRNLWETGNDAGGEMSPPPPP--------PPPRVVICVGDVHGYISKLESLWANLQSAL 62
Query: 331 PVDEFESSVI 360
P D F ++++
Sbjct: 63 PPDAFATALV 72
>03_01_0155 - 1239184-1239491,1240414-1240812,1241017-1241380
Length = 356
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 364 PEKKFVK--WYAAPAEGEPSRDYW-TATQYYVSEESLKAGAGPQI 489
P F++ ++ P +GE DYW A Q + +AG GP +
Sbjct: 272 PRTAFIEDFFFTDPPQGEVGMDYWHAAPQVTQPTQETEAGQGPDV 316
>08_01_0041 - 290333-290698,290854-291861
Length = 457
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = +1
Query: 7 VRDHITKRSAKTSDMD---SKLVIIIVLSSYSYGFQYDGLR----VKFGWSDALADIEYF 165
+ DH TKRS+ D+D S + +++ + YG D ++ + F A IE
Sbjct: 258 IDDHATKRSSSVLDLDNEESDFIDVLLSIQHEYGLTRDNVKAILVIMFEGGTDTAYIELE 317
Query: 166 YSIPRTIK 189
Y++ I+
Sbjct: 318 YAMAELIR 325
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = +3
Query: 372 KVREMVRCSRGRRTL*GLLDSHSILCVRRISEGRSRSTNRKRSHIAGRWSVGRRTRRSPS 551
+VRE R R G SHS R S RS S +R RS+ R R RS S
Sbjct: 180 RVREYDSAKRSRSRSRG--RSHSRSISRSRSRSRSISRSRSRSYSRSRSPRSRSASRSHS 237
Query: 552 P 554
P
Sbjct: 238 P 238
>04_04_0138 + 23067885-23068245,23068393-23068634
Length = 200
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/90 (25%), Positives = 32/90 (35%)
Frame = +1
Query: 214 RTEPPPGPILELRMYCPPGRVVCPLYDTSGFVAGLQIAIPVDEFESSVIKPEKKFVKWYA 393
RT P+L R+ PP CP +D G +++P S+ A
Sbjct: 98 RTRAVQLPLL-CRLDLPPAATACPGFDLGGAAPSPPVSVPRSTPNSTAPSTPTPVTVTRA 156
Query: 394 APAEGEPSRDYWTATQYYVSEESLKAGAGP 483
P + PS + T Y S L A P
Sbjct: 157 PPQQMTPSPKTSSQTPEYSSGLKLIADCVP 186
>03_05_1050 -
29966031-29966076,29966180-29966232,29966420-29966845,
29966983-29967060,29967135-29967220,29969054-29969155,
29969221-29969427,29970528-29970885,29971011-29971174,
29971258-29971366,29971595-29971600
Length = 544
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 284 GQTTLPGGQYILSSRIGPGGGSVLRQPSFSASFMVRGML*KYSMSARASDQPN 126
G + LP G +SSR+ GGG P+FS+S + G + S + A N
Sbjct: 90 GMSQLPHGHSGVSSRVNVGGG-----PAFSSSLNIGGTIQGLSSNLGAGGNRN 137
>03_05_0220 +
22063411-22063468,22063535-22063545,22064478-22064609,
22064696-22065799,22065874-22066566,22066968-22067019,
22067861-22067916,22067917-22068063
Length = 750
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 444 LCVRRISEGRSRSTNRKRSHIAGRWSVGRRTRRSPSPN 557
LCV + S +T++ H WSV R T S S N
Sbjct: 163 LCVCDHLQNLSANTDKSNGHACNTWSVTRMTNISSSMN 200
>02_02_0353 + 9276316-9276518,9276915-9277314
Length = 200
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 465 EGRSRSTNRKRSHIAGRWSVGRRTRRSPSPNP 560
+ RSRS +R+R RW RRSP+P P
Sbjct: 155 DDRSRSRHRRRRR---RWCPSSSPRRSPAPPP 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.136 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,089,258
Number of Sequences: 37544
Number of extensions: 527833
Number of successful extensions: 1582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1582
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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