Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0369
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18192| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_7350| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.006
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.12 
SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8)                   31   0.86 
SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05)               30   1.5  
SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)                 29   4.6  
SB_3976| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_56186| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87)                28   6.0  
SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)                28   6.0  
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)                   28   8.0  
SB_3040| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 28   8.0  

>SB_18192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 532 GPDAHLLRIPTTEAELNSTFFKKQNCIPNMGTHYYYNMTRKMDCEEML 675
           G     + IP    E  +T + +  C+  MG HY+YN+++  DC+  L
Sbjct: 160 GEKPKFMEIPLNVDEFRNTPWVEGECVRAMGVHYHYNISKTFDCDYAL 207


>SB_7350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 532 GPDAHLLRIPTTEAELNSTFFKKQNCIPNMGTHYYYNMTRKMDCEEML 675
           G     + IP    E  +T + +  C+  MG HY+YN+++  DC+  L
Sbjct: 43  GEKPKFMEIPLNVDEFRNTPWVEGECVRAMGVHYHYNISKTFDCDYAL 90


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 20/35 (57%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 471 RSRSTNRKRSHIAGRWSVG-RRTRRSPSPNPHHGS 572
           RSRS +R RS    R S   RR RRS SP+PHH S
Sbjct: 221 RSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRS 255


>SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8)
          Length = 348

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 498 SHIAGRWSVGRRTRRSPSPN-PHHGS*TKQHFLQKTELHP*HGHTLLLQHDK 650
           SH+  R S+G RT+  PS   PHH    + H +   + H  H  T+L Q  K
Sbjct: 133 SHVWARTSLGSRTKDPPSGGPPHHNGSPRAHPITVYDTH--HRTTVLRQRFK 182


>SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05)
          Length = 608

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +3

Query: 462 SEGRSRSTNRKRSHIAGRWSVGRRTRRSPSPNP 560
           S+GRSRS ++  S  +G+ S  + +R+S SP+P
Sbjct: 213 SKGRSRSPSKSPSRKSGKKSGKKSSRKSRSPSP 245


>SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -2

Query: 559 GFGEGERLVRRPTLHRPAMWLRFLFV----DRLRPSEILLTHSIEWLSNSP*RVLLP 401
           GFG    L ++  LH  + W +  F     D   P  + L  SI WL+  P   +LP
Sbjct: 128 GFGYEMDLPKQGKLHELSKWAKGYFPTDDKDSRHPDTVALVTSISWLAMLPLLAMLP 184


>SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)
          Length = 899

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 426 IVPRGFSFRGSSVPFHELFLRLDNR 352
           +V RG++F  +S+PF E   R DN+
Sbjct: 335 LVSRGWTFPPASIPFEEFGFRFDNQ 359


>SB_3976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 334 VDEFESSVIKPEKKFVKWYAAPAEGEPSRDYW 429
           V   +SSV  PE+K    + APAE E + +YW
Sbjct: 484 VSNLKSSVNNPEQKKTS-HLAPAEIEAAEEYW 514


>SB_56186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 334 VDEFESSVIKPEKKFVKWYAAPAEGEPSRDYW 429
           V   +SSV  PE+K    + APAE E + +YW
Sbjct: 199 VSNLKSSVNNPEQKKTS-HLAPAEIEAAEEYW 229


>SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87)
          Length = 770

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 187 LWC--AVCCRSIRCPPGRLTSRISPGDRRTGIRTN 89
           LWC  AV    + CPPG    R S  D+R   R N
Sbjct: 560 LWCKRAVHAFKLNCPPGLWCKRESEDDQRPDRREN 594


>SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)
          Length = 746

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 456 RISEGRSRSTNRKRSHIAGRWSVGRRTRRSPSP 554
           RIS  +S   +RK+SH   R S+    RR P P
Sbjct: 182 RISRKKSHRISRKKSHRGNRISLLSAGRRKPQP 214


>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
          Length = 1056

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 356 TEDSNSSTGIAICKPATKPEVSYSGQTTLPGGQYILSSRIGPGGGS 219
           T  S++  G  + KP+T+P     G  + PG  + L  R   GGG+
Sbjct: 758 TSASSNWAGTGVPKPSTRPSTKARGTLSGPGPPF-LRERSQRGGGT 802


>SB_3040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 451 SEESLKAGAGPQIENGATLQDGGVWVAGPDAHLLRIPTTEAELNS 585
           S+E    G+ P+     TLQD G  V   +    R P+ E E+ S
Sbjct: 100 SDEESVPGSQPEASTSRTLQDAGAIVTVLETRESRAPSLEEEILS 144


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 223 PPPGPILELRMYCPPGRVV 279
           PPP PILEL    PPG V+
Sbjct: 205 PPPPPILELAAPPPPGSVL 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,700,659
Number of Sequences: 59808
Number of extensions: 575329
Number of successful extensions: 1519
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)