Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0369
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    32   0.43 
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    32   0.43 
Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    28   7.0  
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z27079-1|CAA81593.2|  411|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical ...    27   9.3  
AF288374-1|AAK83056.1|  502|Caenorhabditis elegans nicotinic ace...    27   9.3  
AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm rec...    27   9.3  
AC006708-21|AAF60421.3|  502|Caenorhabditis elegans Uncoordinate...    27   9.3  

>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 472 GAGPQIENGATL-QDGGVWVAGPDAHLLRIPTTEAELNSTFFKKQNCIPNMG 624
           G  P I+  A +  DG VW    DA+  R    E +  +  F   N +P  G
Sbjct: 13  GKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTG 64


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 472 GAGPQIENGATL-QDGGVWVAGPDAHLLRIPTTEAELNSTFFKKQNCIPNMG 624
           G  P I+  A +  DG VW    DA+  R    E +  +  F   N +P  G
Sbjct: 13  GKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTG 64


>Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 181 CAVC-CRSIRCPPGRLTSRISPGDRRTGIRTNKS*VQ 74
           C +C C   +CP  R  S    GD +TG+   KS  Q
Sbjct: 9   CQICTCGRHKCPHDRNASSFQLGDGKTGLSQEKSITQ 45


>Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 181 CAVC-CRSIRCPPGRLTSRISPGDRRTGIRTNKS*VQ 74
           C +C C   +CP  R  S    GD +TG+   KS  Q
Sbjct: 9   CQICTCGRHKCPHDRNASSFQLGDGKTGLSQEKSITQ 45


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 471 RSRSTNRKRSHIAGRWSVGRRTRRSPSP-NPHHGS*TKQHFLQ 596
           RSRS +  RS    R S  R   RSPSP    H S   Q+ LQ
Sbjct: 116 RSRSRSSSRSRSPVRESRRRSESRSPSPKRDFHSSMRNQYHLQ 158


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 23/104 (22%), Positives = 40/104 (38%)
 Frame = +1

Query: 316 LQIAIPVDEFESSVIKPEKKFVKWYAAPAEGEPSRDYWTATQYYVSEESLKAGAGPQIEN 495
           L   +P      + I P+   +   +  +   P ++Y T    YV+ +  K   GPQ   
Sbjct: 68  LSSTLPTSTLPITTIGPKSSQIPISSTLSTAAPDKNYCTGNFTYVNHKCWKLVTGPQSRA 127

Query: 496 GATLQDGGVWVAGPDAHLLRIPTTEAELNSTFFKKQNCIPNMGT 627
            A   D   ++ G  + L  I   +  L    F K+  + N+ T
Sbjct: 128 EA---DQACFILG-GSTLFSIRNEQDNLAVLEFVKEKSVENLWT 167


>Z27079-1|CAA81593.2|  411|Caenorhabditis elegans Hypothetical
           protein T05G5.1 protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 453 RRISEGRSRSTNRKRSHIAGRWSVGRRTRRSPS 551
           RRI E R R   R+R H A R  +  R R   S
Sbjct: 161 RRIQEQRVRDDERRRQHEAERSQIEERRREEES 193


>AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical
           protein Y5F2A.4 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
 Frame = +3

Query: 180 HHKGCRK*RLAQN*TTAGTYSRAKDVLSSGKGCLPTIRYFRLRCRLANSYSGRRV*IFCY 359
           HH  CRK     +     ++SR  D++S    CL   + F   C+  +SY  +RV +  +
Sbjct: 150 HHMQCRKYSNVCD-ECGASFSRPADLVSHETSCL---KKFAFVCKPCDSYFRQRVQLDRH 205

Query: 360 QA*EKVREMVRCSRGRRTL*GLLDS--HSILCVRRISEGRSRSTNRKRSHIA 509
                     +CS+  +     + +  HS+ CV+ I  G     N  ++H+A
Sbjct: 206 IKKAHFHP-TKCSKCEQISDTPVQNSRHSLECVKVIICGYCSLKNPDKNHVA 256


>AF288374-1|AAK83056.1|  502|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 532 RRPTLHRPAMWLRFLFVDRLRPSEILLT 449
           R PT H    W++ LFVD L P  +L+T
Sbjct: 349 RSPTTHTMPKWMKRLFVDFL-PKYLLMT 375


>AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm
           receptor protein 20 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 228 RWFSSAPTVIFCILYGARYAVEVF 157
           RW++S    I CI+  A+YA+ +F
Sbjct: 203 RWWNSIANFILCIIMFAQYAIMMF 226


>AC006708-21|AAF60421.3|  502|Caenorhabditis elegans Uncoordinated
           protein 63 protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 532 RRPTLHRPAMWLRFLFVDRLRPSEILLT 449
           R PT H    W++ LFVD L P  +L+T
Sbjct: 349 RSPTTHTMPKWMKRLFVDFL-PKYLLMT 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,364,418
Number of Sequences: 27780
Number of extensions: 424566
Number of successful extensions: 1264
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)