Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0369
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    27   0.16 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.50 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.88 

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 532 RRPTLHRPAMWLRFLFVDRLRPSEILL 452
           R+P+ H+ A W+R +F+ RL P  +L+
Sbjct: 325 RKPSTHKMAPWVRKIFIRRL-PKLLLM 350


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +1

Query: 157  EYFYS-IPRTIKDAENDGWRRTEPPPGP 237
            E+ YS I       E   WR+ +PPP P
Sbjct: 1332 EHIYSSIDSDYSTLERTAWRQQQPPPPP 1359


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 532 RRPTLHRPAMWLRFLFVDRL 473
           R P  HR A W+R +F+  L
Sbjct: 326 RSPVTHRMARWVRVVFIQVL 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,893
Number of Sequences: 438
Number of extensions: 5747
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)