Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0369
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80600.1 68414.m09457 acetylornithine aminotransferase, mitoc...    31   0.93 
At1g63700.1 68414.m07209 protein kinase, putative contains prote...    31   0.93 
At1g68460.1 68414.m07821 adenylate isopentenyltransferase 1 / cy...    30   1.6  
At5g46875.1 68418.m05776 hypothetical protein                          28   4.9  
At5g19560.1 68418.m02329 hypothetical protein contains Pfam prof...    28   4.9  
At3g11325.1 68416.m01377 hypothetical protein                          27   8.6  

>At1g80600.1 68414.m09457 acetylornithine aminotransferase,
           mitochondrial, putative / acetylornithine transaminase,
           putative / AOTA, putative / ACOAT, putative similar to
           SP|O04866 Acetylornithine aminotransferase,
           mitochondrial precursor (EC 2.6.1.11) (ACOAT)
           (Acetylornithine transaminase) (AOTA) {Alnus glutinosa};
           contains Pfam profile PF00202: aminotransferase, class
           III
          Length = 457

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +3

Query: 231 GTYSRAKDVLSSGKGC 278
           GTY+RA  VLSSGKGC
Sbjct: 71  GTYARAPVVLSSGKGC 86


>At1g63700.1 68414.m07209 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069; similar to MEK kinase
           (MAP3Ka) [Arabidopsis thaliana] gi|4204912|gb|AAD10848
          Length = 883

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 462 SEGRSRSTNRKRSHIAG-RWSVGRRTRRSPSPN 557
           S GRSR + R+R  I   R ++ R   RSPSP+
Sbjct: 35  SSGRSRKSRRRRDEIVSERGAISRLPSRSPSPS 67


>At1g68460.1 68414.m07821 adenylate isopentenyltransferase 1 /
           cytokinin synthase (IPT1) identical to adenylate
           isopentenyltransferase (IPT1) [Arabidopsis thaliana]
           GI:14279054
          Length = 357

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
 Frame = +1

Query: 313 GLQIAIPVDEFES--SVIKPEKKFVKWYAA------PAEGEPSRDYWTATQYYVSEESLK 468
           G++ AI V EF+       PEKK +KW A        A  +  R+ WT  +  V +  + 
Sbjct: 246 GIRKAIGVPEFDGYFKEYPPEKKMIKWDALRKAAYDKAVDDIKRNTWTLAKRQVKKIEML 305

Query: 469 AGAGPQIE 492
             AG +IE
Sbjct: 306 KDAGWEIE 313


>At5g46875.1 68418.m05776 hypothetical protein
          Length = 132

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 478 GPQIENGATLQDGGVWVAGPDAHLLRIPTTEAELNSTFFKKQNCIPNMGTHYY 636
           GP +  G      G W  G D H+ R     AEL   F K +    +M + +Y
Sbjct: 55  GPTMAGGVLQDSKGRWCDGFDVHIGRCSAPLAELWGGFLKTRTDDSHMMSSWY 107


>At5g19560.1 68418.m02329 hypothetical protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 493

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 139 DALADIEYFYSIPRTIKDAENDG-WRRTE 222
           D   D + F+ +PR ++DA+++G WRR E
Sbjct: 163 DNFKDQKDFWYVPRDMEDADHNGDWRRDE 191


>At3g11325.1 68416.m01377 hypothetical protein
          Length = 401

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 199 NDGWRRTEPPPGPILELRMYCPPGRVVCPLYDTSGFVAGLQI 324
           NDG     P P   L + ++ P G V+ P+   SGF+  + I
Sbjct: 145 NDGRLVKRPTPATALLILIWIPFGMVLSPIRILSGFILPMWI 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,315,513
Number of Sequences: 28952
Number of extensions: 387624
Number of successful extensions: 1091
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)