Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0368
         (731 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    26   0.27 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    26   0.27 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    26   0.27 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    26   0.27 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    26   0.27 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           26   0.27 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    26   0.27 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    26   0.27 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.9  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 337 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 435
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 337 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 435
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 337 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 435
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 337 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 435
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 337 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 435
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 337 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 435
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 337 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 435
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 337 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 435
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +2

Query: 35  SHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDIS 172
           S  P LS     S   +FN +P    + A    +   +N ++ D+S
Sbjct: 458 SQVPALSTPNLLSLSLAFNSLPTVALEVAGNISSLRYLNLDYNDLS 503


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,550
Number of Sequences: 336
Number of extensions: 2829
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)