Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0368
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 217 1e-57
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 30 0.30
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 29 0.52
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 29 0.68
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 29 0.90
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 28 1.2
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 28 1.6
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 2.1
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 26 4.8
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 26 6.4
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 26 6.4
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 217 bits (531), Expect = 1e-57
Identities = 111/191 (58%), Positives = 136/191 (71%), Gaps = 22/191 (11%)
Frame = +2
Query: 95 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 274
M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A
Sbjct: 1 MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60
Query: 275 EFRKIGCEVL--------------GAP--------MNIPLISDKSHRISRDYGVLDEETG 388
+F + +V+ P +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61 KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120
Query: 389 IPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 568
+ FRGLF+ID K LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW G+ TI
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI 180
Query: 569 KPDTKAAQEYF 601
DTK ++YF
Sbjct: 181 --DTKNPEKYF 189
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.3 bits (65), Expect = 0.30
Identities = 31/123 (25%), Positives = 56/123 (45%)
Frame = -3
Query: 495 TSRRVSSTDLPTGRSLIVICLRFCLSSMMKSPRKGMPVSSSSTP*SREMRCDLSLIRGMF 316
TS V +T P S +V SS + + P++SSS S S++
Sbjct: 1189 TSSTVVNTSTPITSSTVVNSSTPITSSTVLNT--STPITSSSVLNSSTPITSSSILNS-- 1244
Query: 315 MGAPSTSQPILRNSSAFSENAMISVGHTNVKSKG*KNSTTYFPL*SDREMSLNSPLTTAV 136
P TS +L +S+ + + +++ T + S N T P+ S ++ ++P+T++
Sbjct: 1245 -STPITSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSST 1300
Query: 135 ALN 127
ALN
Sbjct: 1301 ALN 1303
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 29.5 bits (63), Expect = 0.52
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 499 LHQPQGLLHRPPHGQVVDRDL-PEVLLVVDDEESSEGNARLLVQ 371
L Q Q L + ++ D DL PEV ++ +EES G +R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 29.1 bits (62), Expect = 0.68
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +2
Query: 20 FISKASHSPVLSVFVYYSK---VFSFNKMPLQMT--KPAPQFKATAVVNGEFKDISLSDY 184
FI+ S + + SVFV +F+ + L P P F+ + +G+F S +
Sbjct: 234 FIASYSLAEITSVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTIL 293
Query: 185 KGKYVVLFFYPLDFTFVCPTE 247
K K V L YP TF TE
Sbjct: 294 KSKPVSLCVYPEKITFNWLTE 314
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 28.7 bits (61), Expect = 0.90
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +1
Query: 283 QDRLRGARRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRP 456
Q +R AR H S D++ + H R S G HS +LH QA+P A ++P
Sbjct: 447 QKAVRSARHRHYASLDEQGL--HSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 425 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 595
+NL++I + LPVG +++ LR V T K+G++ P K+ + K E
Sbjct: 92 KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDILGCCLTPEDKSGVANEKYTSE 150
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.6
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Frame = +2
Query: 23 ISKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGE--------FKDISLS 178
+S S S F+Y SF++ T +P+ TA+ FK +
Sbjct: 26 LSPIGDSKNTSSFIYLGNPISFHEYNYDETMVSPENVKTAIAGSAKDHETCRGFKKTGTT 85
Query: 179 DYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRK 286
YK F + D+T PT + S+ DEF K
Sbjct: 86 SYKD-----FVFSRDYTNWTPTFWVLLSQLIDEFLK 116
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 227 TFVCPTEIIAFSEKADEFRKIGCEVLGAPMNIPLISDKSHRISRDYGVLDEE 382
TF T + E DEF ++G +VLG P++ + ++ +R ++E+
Sbjct: 556 TFGGQTALNVGIELKDEFEQLGVKVLGTPIDTIITTEDRELFARAMDEINEK 607
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 2 QDPTVIFISKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVN 151
++ T +F KA + S +FSFN TKP+P +T N
Sbjct: 444 ENKTPVFSFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFN 493
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 561 LAPGLQLAGHTSPCLSVNW 505
L P +L HT PC SV W
Sbjct: 174 LKPKYRLTKHTQPCTSVCW 192
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 387 PVSSSSTP*SREMRCDLSLIRGMFMGAPSTSQPILRN---SSAFSENAMISVG 238
P ++SS S M + S + +GA + SQP L N SS +N + S G
Sbjct: 425 PANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLANHLSSSGLFDNGLFSSG 477
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,889
Number of Sequences: 5004
Number of extensions: 48640
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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