Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0368
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 107 7e-24
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 99 4e-21
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 67 1e-11
06_01_0671 - 4899611-4899829,4900870-4901448 60 1e-09
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 58 7e-09
01_03_0105 + 12604125-12604583 31 0.71
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 29 2.9
01_07_0192 - 41888998-41890632 29 2.9
04_04_0755 + 27812097-27812144,27812377-27812462,27812976-278130... 29 5.0
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522... 29 5.0
01_06_0813 - 32165310-32165546,32165691-32165783,32166075-321662... 29 5.0
12_01_1057 - 10899871-10899961,10900255-10900411,10901420-109014... 28 6.6
11_04_0217 + 14979455-14979781 28 6.6
08_02_1137 + 24623967-24623991,24625815-24625831,24626100-246262... 28 6.6
07_01_0632 + 4729426-4731300 28 6.6
07_01_0478 - 3605306-3605614,3605766-3605906 28 6.6
05_06_0209 - 26389902-26389928,26389981-26390161,26390265-263904... 28 6.6
04_04_0858 + 28800691-28801155,28801293-28801515,28802555-28803048 28 6.6
02_03_0183 + 16106205-16106474 28 6.6
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 28 8.8
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764 28 8.8
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 28 8.8
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 107 bits (258), Expect = 7e-24
Identities = 50/97 (51%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Frame = +2
Query: 314 MNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRL 493
+ PLISD + IS+ +GVL + GI RGLFIID + ++ TIN+L +GRSV+ET+R
Sbjct: 230 LKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETMRT 289
Query: 494 VQAFQFT-DKHGEVCPANWRPGAKTIKPDTKAAQEYF 601
+QA Q+ D EVCPA W+PG K++KPD K ++EYF
Sbjct: 290 LQALQYVQDNPDEVCPAGWKPGDKSMKPDPKGSKEYF 326
Score = 92.3 bits (219), Expect = 4e-19
Identities = 50/99 (50%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Frame = +2
Query: 26 SKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK-YVV 202
+ +S S S FV ++ + PL K AP F A AV + EF ++ LSDY GK YV+
Sbjct: 46 ASSSRSARASSFV--ARAGGVDDAPLVGNK-APDFDAEAVFDQEFINVKLSDYIGKKYVI 102
Query: 203 LFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGAPMN 319
LFFYPLDFTFVCPTEI AFS++ DEF K+ E+LG ++
Sbjct: 103 LFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSID 141
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 98.7 bits (235), Expect = 4e-21
Identities = 55/125 (44%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Frame = +2
Query: 230 FVCPTEIIAFSEKADEFRKIGCEVLGAPMNIPLISDKSHRISRDYGVLDEETGIPFRGLF 409
FV EI AFS++ +EF KI EVLG + + GI RGLF
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSI--------------------DSVGIALRGLF 87
Query: 410 IIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKH-GEVCPANWRPGAKTIKPDTKA 586
IID + ++ TIN+L +GRSV+ETLR +QA Q+ ++ EVCPA W+PG K++KPD K
Sbjct: 88 IIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKD 147
Query: 587 AQEYF 601
++EYF
Sbjct: 148 SKEYF 152
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 67.3 bits (157), Expect = 1e-11
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 29/165 (17%)
Frame = +2
Query: 167 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGA----------- 310
I + D+ G YV+LF +P DFT VC TE+ A + A EF K G ++LG
Sbjct: 57 IRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDW 116
Query: 311 --------PMN---IPLISDKSHRISRDYGVLD----EETG--IPFRGLFIIDDKQNLRQ 439
P N P+++D S + ++D + G +P R L I+ + ++
Sbjct: 117 IKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVGPDKKVKL 176
Query: 440 ITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKP 574
+ VGR+++E +R V A Q KH P NW+PG + + P
Sbjct: 177 SFLYPACVGRNMDEVVRAVDALQTAAKHAVATPVNWKPGERVVIP 221
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 60.5 bits (140), Expect = 1e-09
Identities = 36/128 (28%), Positives = 69/128 (53%), Gaps = 16/128 (12%)
Frame = +2
Query: 167 ISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGA------------ 310
+SLS +KG+ VV++FYP D T C + AF + ++F+K G EV+G
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEFK 196
Query: 311 ---PMNIPLISDKSHRISRDYGVLDEETG-IPFRGLFIIDDKQNLRQITINDLPVGRSVE 478
+ L+SD+ +++ +++GV + G +P R +++D ++ I N + +
Sbjct: 197 KKYKLPFTLLSDEGNKVRKEWGVPADLFGTLPGRQTYVLDKNGVVQYIYNNQFQPEKHIG 256
Query: 479 ETLRLVQA 502
ETL+++Q+
Sbjct: 257 ETLKILQS 264
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 58.0 bits (134), Expect = 7e-09
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Frame = +2
Query: 167 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL------------- 304
I L D+ G YV++F +P DFT VC TE+ + A EF K G ++L
Sbjct: 22 IRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKDW 81
Query: 305 ---------GAPMNIPLISDKSHRISRDYGVLD---EETG---IPFRGLFIIDDKQNLRQ 439
G + P+++D R ++D ++T +P R L I+ + ++
Sbjct: 82 IKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDADEKDTAGGELPNRALHIVGPDKKVKL 141
Query: 440 ITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 595
+ GR++ E LR A +H P NW+PG + + P + +E
Sbjct: 142 SFLFPACTGRNMAEVLRATDALLTAARHRVATPVNWKPGERVVIPPGVSDEE 193
>01_03_0105 + 12604125-12604583
Length = 152
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 313 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPA 459
H+H Q +P +LR GR DG H RRQ Q + +PA
Sbjct: 63 HQHKLFYSQPSPPRAKLRLVGRIDGRKEEAAHHSRRQPSLQKEAAAKPA 111
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 29.5 bits (63), Expect = 2.9
Identities = 41/165 (24%), Positives = 56/165 (33%), Gaps = 6/165 (3%)
Frame = +1
Query: 241 DGDHRVLGEGGRVPQDRLRGARRPHEHSSDKRQVAPHLP-RLRSAGRGDGHSLPRTLHHR 417
D R G GR P DRLR R P R H R RS H + R H+R
Sbjct: 255 DRHERSPGILGRFPHDRLRHDRSPSRLEPSPRDRGRHYDNRDRSPYISPRHRM-RPSHYR 313
Query: 418 ----RQAEPQADHDQRPARXXXXXXXXXXXXXLPVHGQARRGVPRQLEARRQDHQARHQG 585
+ E D P+R R P + + H+A +
Sbjct: 314 DNTPSRGEMHHHRDNTPSRVDSSPRRSQHEDFRDRSPSRRDKSPSERGRTTESHEAGKKS 373
Query: 586 RPGVLRRRQLDTTPHQ-QSL*LNTQFRKGHISENVKWSGIEKKTD 717
R L L+ H+ +S +T+ + N K S EK T+
Sbjct: 374 RGAKLENNSLEKAQHKSKSTKQSTKSKSSSNGSNEKISK-EKATE 417
>01_07_0192 - 41888998-41890632
Length = 544
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +1
Query: 295 RGARRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQA 438
R RR HE S R P G GDG+ R +H+ A +A
Sbjct: 347 RCERRVHEEVSSSRHADPRRADAGEDGHGDGYDELRRMHYLHAAISEA 394
>04_04_0755 +
27812097-27812144,27812377-27812462,27812976-27813037,
27813256-27813374,27813511-27813678,27813766-27813798
Length = 171
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 128 FKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLG 307
F V + KD++LS YKGK V+L + + S+ ++++ G E+L
Sbjct: 13 FTVKGVQDASGKDVNLSTYKGK-VLLIVNVASQCGLTNSNYTELSQLYEKYKVQGFEILA 71
Query: 308 APMN 319
P N
Sbjct: 72 FPCN 75
>03_05_0554 -
25551220-25551310,25551562-25551695,25552115-25552221,
25552359-25552437,25552524-25552613,25552790-25553044,
25553388-25553537,25553677-25553976
Length = 401
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 600 KYSWAALVSGLMVLAPGLQ 544
KY W A+ G MVL PGL+
Sbjct: 370 KYRWKAIKGGTMVLGPGLR 388
>01_06_0813 -
32165310-32165546,32165691-32165783,32166075-32166218,
32166685-32166771,32166858-32167077,32167879-32168039
Length = 313
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -2
Query: 520 LVRELEGLHQPQGLLHRPPHGQVVDRDLPEVLL 422
+VRE E LHQ G P DLPE LL
Sbjct: 117 MVRETEKLHQQVGRYKSPDEHPFFPEDLPEPLL 149
>12_01_1057 -
10899871-10899961,10900255-10900411,10901420-10901498,
10901618-10901707,10903232-10903486,10903674-10903689,
10903907-10903940,10905653-10905884
Length = 317
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 600 KYSWAALVSGLMVLAPGLQ 544
KY W + G MVL PGLQ
Sbjct: 286 KYRWKVIKGGKMVLCPGLQ 304
>11_04_0217 + 14979455-14979781
Length = 108
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 418 VDDEESSEGNARLLVQHSVVAG-DAVRLV-AYQRNVHGGAEH 299
+DD+E+ G +L +H VVAG D R V V GG H
Sbjct: 67 LDDDENDVGGGHMLCRHGVVAGSDMERGVKRCSHGVKGGRGH 108
>08_02_1137 +
24623967-24623991,24625815-24625831,24626100-24626216,
24626399-24626440,24627246-24629705
Length = 886
Score = 28.3 bits (60), Expect = 6.6
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Frame = -3
Query: 510 NWKACTSRRVSSTDLPTGRSLIVICLRFCLSSMMKSPRKGMPVSSSSTP*SREMRCDLSL 331
NW++C S+ V+ GR I + P +GMP + RE +LS
Sbjct: 201 NWRSCVSKTVTLLRSKLGRKSIA-------EKESEGP-EGMPFPRNRHFVGREK--ELSE 250
Query: 330 IRGMFMGAPSTSQPI--LRNSSAFSENAMISVGHTNVKSKG*KNSTTYF---PL*SDREM 166
I GMF G+ Q + R S+A ++ +S G + +S + S + + +E
Sbjct: 251 IEGMFFGSTVDIQEVDCPRGSAANDRSSGVSDGFADEESDTVRTSNARYISLEMRKCKEP 310
Query: 165 SLNSPLTTAVALNWGAG 115
+L + + + L+ G G
Sbjct: 311 TLEAWIDPVIELSSGKG 327
>07_01_0632 + 4729426-4731300
Length = 624
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 223 LHVRVPDGDHRVLGEG--GRVPQDRLRGARRPHE 318
++ R DGD V GEG GR+P D+ R P E
Sbjct: 579 IYARFRDGDGAVAGEGGDGRLPVDQRRRPPPPEE 612
>07_01_0478 - 3605306-3605614,3605766-3605906
Length = 149
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 373 GRGDGHSLPRTLHHR 417
G DGH LPRTL HR
Sbjct: 4 GGDDGHGLPRTLSHR 18
>05_06_0209 -
26389902-26389928,26389981-26390161,26390265-26390407,
26390480-26390588,26390839-26391023,26391428-26392082,
26392392-26392496,26392757-26392844,26392885-26392947,
26393451-26393513,26394328-26394484
Length = 591
Score = 28.3 bits (60), Expect = 6.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 638 DCWCGVVSSWRR 603
DCWCG + WRR
Sbjct: 8 DCWCGALRLWRR 19
>04_04_0858 + 28800691-28801155,28801293-28801515,28802555-28803048
Length = 393
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 404 VLGRECPSPRPALRSRGRCGATCRLSEECSWGRR 303
V GR+ + + S+ C ATC L EE G+R
Sbjct: 146 VAGRQSHETQKQVASKMDCEATCHLDEELEQGQR 179
>02_03_0183 + 16106205-16106474
Length = 89
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 323 PLISDKSHRISRDYGVLDEETGIP 394
PL S HR SR +G L E +G P
Sbjct: 59 PLASSHEHRFSRLHGCLPESSGFP 82
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 262 GEGGR---VPQDRLRGARRPHEHSSDKRQVAPHLPRLRSAGRGDGHSL 396
G GGR P ++ A R H H +QVA P+ RSA H++
Sbjct: 147 GGGGRRAPSPSPQMHAASRRHHHGRHHQQVA---PKARSASASPQHNI 191
>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
Length = 973
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -2
Query: 484 GLLHRPPHGQVVDRDLPEVLLVVDDEESSEGNARLLVQHSVVAGDAVRLVAYQRNVHG 311
G+L +G+VVD L + ++DD E +L +H A +R + R+V G
Sbjct: 841 GVLESNENGRVVDAVLGALCTLMDDAVDVERGVAVLAEHD-AARHVLRALRQHRDVGG 897
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 143 VVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR-KIGCEVLGAPMN 319
++N + K ++ D+ GK+ +L+F +CP E+ + D+ + K EV+ +
Sbjct: 187 LLNHDGKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAIDKIKEKAKMEVVPVFIT 246
Query: 320 IPLISDKSHRISRDY 364
+ D ++ RDY
Sbjct: 247 VDPERDTVEQV-RDY 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,526,960
Number of Sequences: 37544
Number of extensions: 363204
Number of successful extensions: 1353
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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