Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0368
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   225   2e-59
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)             161   5e-40
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)             141   5e-34
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   2e-15
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)                45   7e-05
SB_22138| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           31   0.96 
SB_54429| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5)           29   3.9  
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)           29   3.9  
SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08)                  29   3.9  
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                  28   6.8  
SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  225 bits (551), Expect = 2e-59
 Identities = 116/190 (61%), Positives = 137/190 (72%), Gaps = 26/190 (13%)
 Frame = +2

Query: 74  KVFSFNKMPLQMT---KPAPQFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCP 241
           ++ SF++  +  T   KPAP F  TAV  +GEF D+ LSDYKGKYVVLFFYPLDFTFVCP
Sbjct: 39  RMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCP 98

Query: 242 TEIIAFSEKADEFRKIGCEVLGAPM----------------------NIPLISDKSHRIS 355
           TEIIAFS++ DEF+ I CEV+   +                      NIP++SD + +IS
Sbjct: 99  TEIIAFSDRVDEFKAINCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQIS 158

Query: 356 RDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVC 535
           +DYGVL E+ G+  RGLFIIDDK  LRQITINDLPVGRSV+ETLRL+QAFQFTDKHGEVC
Sbjct: 159 KDYGVLLEDQGVALRGLFIIDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVC 218

Query: 536 PANWRPGAKT 565
           PA WRPGA T
Sbjct: 219 PAGWRPGADT 228


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score =  161 bits (391), Expect = 5e-40
 Identities = 85/140 (60%), Positives = 104/140 (74%)
 Frame = +2

Query: 104 QMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 283
           Q++KPAP ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 55  QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114

Query: 284 KIGCEVLGAPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPV 463
            I  EV+G  ++    S  +H                  GLFIIDDK  LRQIT+NDLPV
Sbjct: 115 AINTEVVGCSVD----SVFTHLA---------------WGLFIIDDKGVLRQITMNDLPV 155

Query: 464 GRSVEETLRLVQAFQFTDKH 523
           GRSV+ETLRLVQAFQ+TDKH
Sbjct: 156 GRSVDETLRLVQAFQYTDKH 175


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score =  141 bits (342), Expect = 5e-34
 Identities = 64/84 (76%), Positives = 74/84 (88%)
 Frame = +2

Query: 314 MNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRL 493
           +NIP++SD + +IS+DYGVL E+ G+  RGLFIIDDK  LRQITINDLPVGRSV+ETLRL
Sbjct: 14  INIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLPVGRSVDETLRL 73

Query: 494 VQAFQFTDKHGEVCPANWRPGAKT 565
           +QAFQFTDKHGEVCPA WRPGA T
Sbjct: 74  IQAFQFTDKHGEVCPAGWRPGADT 97


>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 34/47 (72%), Positives = 39/47 (82%)
 Frame = +2

Query: 461 VGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYF 601
           VGRSV+ETLRLVQAFQ+TDKHGEVCPA W+PG  TI PD    ++YF
Sbjct: 1   VGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIIPDPTQKKKYF 47


>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
 Frame = +2

Query: 308 APMNIPLISDKSHRISRDYGVLD----EETGIPF--RGLFIIDDKQNLRQITINDLPVGR 469
           A  N P+I+D+   ++   G++D    +  G+P   R +FII   + L+   +     GR
Sbjct: 31  AKFNYPIIADERRELAVKLGMVDPDEKDSKGLPLTCRAVFIIGPDKKLKLSILYPATTGR 90

Query: 470 SVEETLRLVQAFQFTDKHGEVCPANWRPGAK-TIKPDTKAAQE 595
           + +E LR++ + Q T       P +W+ G    + P  K  +E
Sbjct: 91  NFDEILRVIDSLQLTATKKVATPVDWKLGGDCMVIPSIKPEEE 133


>SB_22138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = -3

Query: 429 FCLSSMMKSPRKGMPVSSSSTP*SREMRCDLSLIRGMFMGAPSTSQPILRNSSAFSENAM 250
           F LS  + +   G P SS  +P  R++R    L+ GMF G    S+ +L  SS++ +  +
Sbjct: 746 FELSEFLLAGSSGFPSSSYPSPSYRDVRVIPVLVSGMFDGEFELSEFVLAGSSSYRDVRV 805

Query: 249 ISV 241
           I V
Sbjct: 806 IRV 808


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +1

Query: 304 RRPHEHSS---DKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRP 456
           RRPH+H +   D   +A   PR R  G  +G        HRR   P + HD+ P
Sbjct: 331 RRPHDHHADPYDSHAIAEEYPRGRDQGMEEGRRDITPESHRR--GPPSRHDRAP 382


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +2

Query: 329 ISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGR-SVEE--TLRLVQ 499
           + DKS    R +  LD+  GI   G  ++ +  N+ +ITIN+    +  ++   TL  V 
Sbjct: 137 VQDKSG--IRIFSDLDDAHGIIDFGKRLLTEDTNIIEITINNTSTTQVKIKRFSTLEEVP 194

Query: 500 AFQFTDKHG 526
            F F+DKHG
Sbjct: 195 EFSFSDKHG 203


>SB_54429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = +1

Query: 523 RRGVPRQLEARRQDHQARHQGRPGVLRRRQLDTTPHQQSL*LNTQFRKGHISENVKWSGI 702
           R G   +LE  RQDH +R   RP   RRR+ D   H+Q   L         S    W G+
Sbjct: 223 REGGQEKLE--RQDHVSRTYQRPSADRRRKEDNV-HRQETGLTDNGTIREASYTFYWQGL 279

Query: 703 E 705
           +
Sbjct: 280 Q 280


>SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 190 EICCAVLLSFGLHVRVPDGDHRVLGEGGRVPQDRLRGA 303
           + CC V  +FG        DHR+LG       D   GA
Sbjct: 475 DFCCTVKAAFGYKKNATTKDHRMLGTNNVASNDYTTGA 512


>SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5)
          Length = 380

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 508 VHGQARRGVPRQLEARRQDHQARHQGRPGVLRRRQLD 618
           VH + R+G   +L  +    + R QG+  VLR RQ D
Sbjct: 262 VHPRPRQGTDVRLPLQLHQREVRRQGKATVLRYRQSD 298


>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
          Length = 334

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 275 EFRKIGC-EVLGAPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI--T 445
           E R++   E  G P       D    ++  Y V+D+ET I   GL  I +K+N +++  T
Sbjct: 254 EVREVSAVETQGNPFPDVYHFDTIREVNCRYNVVDKETRIKVTGLLTIKEKKNGKELYRT 313

Query: 446 IND 454
            ND
Sbjct: 314 RND 316


>SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08)
          Length = 416

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/56 (39%), Positives = 28/56 (50%)
 Frame = +2

Query: 26  SKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK 193
           S +S SPVLSV    + V S +   +Q T   P F AT +  G F D  L+   GK
Sbjct: 204 SSSSRSPVLSVTDGIA-VQSSSTESVQPTLILPPFTATGLHTGSFYDDCLAVLSGK 258


>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 344

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 29/130 (22%), Positives = 41/130 (31%), Gaps = 5/130 (3%)
 Frame = +1

Query: 262 GEGGRVPQDRLRGARRPHEHSSD---KRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEP 432
           G+  R PQD+ + A RP         KRQ +    R  S             H  R+ + 
Sbjct: 88  GQATRKPQDQNKQAARPRPRQKSRKIKRQASRKTKRQASRKTNTSKRQDHYKHASRKTKT 147

Query: 433 QADHDQ--RPARXXXXXXXXXXXXXLPVHGQARRGVPRQLEARRQDHQARHQGRPGVLRR 606
               DQ  R  +              P         PRQ E+R+   QA    R    + 
Sbjct: 148 SQSQDQETRKLQDQKTRKPQDQKTGKPQDQDKEAARPRQ-ESRKNKRQAARPKRQATCKT 206

Query: 607 RQLDTTPHQQ 636
           + +   P  Q
Sbjct: 207 KTIKPQPQDQ 216


>SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 523 RRGVPRQLEARRQDHQARHQGRPGVLRR 606
           RR +PR LE +RQ  Q R   R  +LRR
Sbjct: 299 RRRIPRLLEQQRQIRQQRLPERLAILRR 326


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +1

Query: 262  GEGGRVPQ---DRLRGARRPHEHSSDKRQVAPHLPRLRSAGRGDG 387
            G GGR       R RG+R   E S+      P  P +R  GRG G
Sbjct: 1099 GRGGRKSARGASRKRGSRARAEESAADTGEGPSSPAIRGRGRGKG 1143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,738,892
Number of Sequences: 59808
Number of extensions: 398450
Number of successful extensions: 1699
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)