Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0368
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   252   3e-67
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   201   4e-52
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    44   1e-04
Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical p...    33   0.21 
U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    31   1.1  
Z83119-3|CAB05581.1|  163|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell l...    30   1.9  
AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain p...    30   1.9  
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical ...    28   5.9  
AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical ...    28   5.9  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  252 bits (616), Expect = 3e-67
 Identities = 125/185 (67%), Positives = 141/185 (76%), Gaps = 22/185 (11%)
 Frame = +2

Query: 113 KPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIG 292
           KPAPQFK  AVV+GEF D+SLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++A+EF+ I 
Sbjct: 8   KPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAIN 67

Query: 293 CEVLGAP----------------------MNIPLISDKSHRISRDYGVLDEETGIPFRGL 406
             VL A                       MNIP+++D +H+ISRDYGVL E+ GI FRGL
Sbjct: 68  TVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGL 127

Query: 407 FIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKA 586
           FIID  QNLRQITINDLPVGRSV+ETLRLVQAFQF +KHGEVCPA W PG+ TIKP  K 
Sbjct: 128 FIIDPSQNLRQITINDLPVGRSVDETLRLVQAFQFVEKHGEVCPAGWTPGSDTIKPGVKE 187

Query: 587 AQEYF 601
           +QEYF
Sbjct: 188 SQEYF 192


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  201 bits (491), Expect = 4e-52
 Identities = 98/190 (51%), Positives = 131/190 (68%), Gaps = 22/190 (11%)
 Frame = +2

Query: 98  PLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADE 277
           PL      P FK TAVV+G+FK IS  DYKGK++V+FFYPLDFTFVCPTEIIA+ ++A+E
Sbjct: 32  PLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANE 91

Query: 278 FRKIGCEVLGAP----------------------MNIPLISDKSHRISRDYGVLDEETGI 391
           FR +G EV+                         M+IPL++D + +I+  +GVLD+E+G+
Sbjct: 92  FRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGL 151

Query: 392 PFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIK 571
            +RGLF+ID    +R  T NDLPVGRSV+ETLR+++AFQF+DKHGEVCPA+W   + TIK
Sbjct: 152 SYRGLFLIDPSGTVRHTTCNDLPVGRSVDETLRVLKAFQFSDKHGEVCPADWHEDSPTIK 211

Query: 572 PDTKAAQEYF 601
           P    ++EYF
Sbjct: 212 PGVATSKEYF 221


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 33/169 (19%)
 Frame = +2

Query: 161 KDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL----------- 304
           K+ +L +Y G+ +++LF +P DFT VC TE+    + A EFRK   ++L           
Sbjct: 18  KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHR 77

Query: 305 ---------------GAPMNIPLISDKSHRISRDYGVLD------EETGIPFRGLFIIDD 421
                          G+ +   +I+D    I  + G++D      E   +  R + +   
Sbjct: 78  DWAKDINSVAQLSNCGSHLPFEIIADTDRSICTELGMIDPDEMNSEGICLSARAVMLFGP 137

Query: 422 KQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 568
            + L+   +     GR+  E LR+V   Q   K     PANW  G   I
Sbjct: 138 DKKLKSKILYPATFGRNFVEILRMVDGVQLGTKAPVATPANWIAGDNVI 186


>Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical
           protein F26E4.12 protein.
          Length = 163

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +2

Query: 143 VVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGAPMN 319
           V N    D+SLSDYKGK V++         +         E  D ++K G EVL  P N
Sbjct: 9   VKNANGDDVSLSDYKGK-VLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLAFPCN 66


>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 265 EGGRVPQDRLRGARRPHEHSSDKRQVAPHLPRLRSAGRGDGH-SLPRTLHHRRQAEPQ 435
           E G+  Q +    ++ H++   ++Q A H P   ++   +G+ ++ +  HH +Q +PQ
Sbjct: 662 ENGQYQQQQSSEVKQEHQNHGYQQQQAQHPPASVASNGHNGYGNVDQNAHHHQQQQPQ 719


>Z83119-3|CAB05581.1|  163|Caenorhabditis elegans Hypothetical
           protein R05H10.5 protein.
          Length = 163

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 143 VVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGAPMN 319
           V N + +D  LS+Y+GK V++         +  +    F E  D ++K G EVL  P N
Sbjct: 9   VKNAQGEDTPLSNYQGK-VLIIVNVASQCGLTNSNYNQFKELLDVYKKDGLEVLAFPCN 66


>U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell
           lineage protein 49 protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 360 SREMRCDLSLIRGMFMGAPSTSQPILRNSSAFSENAMISVGHTNVKSKG*KNS 202
           S+    D+S  +  ++G+PSTSQ + R    FS N      H  + +    NS
Sbjct: 741 SKSSDADVSSPKSSWLGSPSTSQNLRRRVQGFSGNESSPKVHKKLSTDNPSNS 793


>AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain
           protein LIN-49 protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 360 SREMRCDLSLIRGMFMGAPSTSQPILRNSSAFSENAMISVGHTNVKSKG*KNS 202
           S+    D+S  +  ++G+PSTSQ + R    FS N      H  + +    NS
Sbjct: 741 SKSSDADVSSPKSSWLGSPSTSQNLRRRVQGFSGNESSPKVHKKLSTDNPSNS 793


>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical protein
            F58H1.1b protein.
          Length = 1145

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -3

Query: 387  PVSSSSTP*SREMRCDLSLIRGMFMGAPSTSQPILRNSSAFSENAMI 247
            P S SS    +E+ CDL L+    + +P+T +   R+++A  + AM+
Sbjct: 1030 PKSISSKNVEQELNCDLHLVTFRTLASPTTYEANERSTAAEKKAAMV 1076


>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical protein
            F58H1.1a protein.
          Length = 1143

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -3

Query: 387  PVSSSSTP*SREMRCDLSLIRGMFMGAPSTSQPILRNSSAFSENAMI 247
            P S SS    +E+ CDL L+    + +P+T +   R+++A  + AM+
Sbjct: 1028 PKSISSKNVEQELNCDLHLVTFRTLASPTTYEANERSTAAEKKAAMV 1074


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 313 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEP 432
           HE  S K++ +  L R      G GHS+  T H R   +P
Sbjct: 625 HEMWSKKQKKSARLGRQAEGSSGSGHSIRATSHPRAPTQP 664


>AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical
           protein C53C7.1b protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 425 QNLRQITIND-LPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 559
           Q L+ I+ N  + VG SV   ++  +  QF +  GE C  NW P A
Sbjct: 142 QALKMISFNSAISVGLSVPLFMKQ-ELMQFRNYCGEYCSENWGPDA 186


>AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical
           protein C53C7.1a protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 425 QNLRQITIND-LPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 559
           Q L+ I+ N  + VG SV   ++  +  QF +  GE C  NW P A
Sbjct: 142 QALKMISFNSAISVGLSVPLFMKQ-ELMQFRNYCGEYCSENWGPDA 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,546,914
Number of Sequences: 27780
Number of extensions: 293085
Number of successful extensions: 1031
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)