Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0368
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.9  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   5.2  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   5.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.2  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   6.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +1

Query: 358 RLRSAGRGDGHSLP-RTLHHRRQAEPQADHDQRP 456
           RL  +  GD    P + LHH +   PQA    +P
Sbjct: 797 RLSKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQP 830


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 386 PSPRPALRSRGRCGATCRLSEECSW 312
           P P P+   RGRC +  ++S    W
Sbjct: 45  PKPIPSYACRGRCSSYLQVSGSKIW 69


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 137  TAVVNGEFKDISLSDY 184
            T +++  FKD+ LSD+
Sbjct: 1401 TPIMDAHFKDVKLSDF 1416


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 197 VVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 304
           V +   P++  F  P E     E+AD  R++ C++L
Sbjct: 15  VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLL 49


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 197 VVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 304
           V +   P++  F  P E     E+AD  R++ C++L
Sbjct: 15  VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLL 49


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 547 EARRQDHQARHQGRPGVLRRRQLDTTPHQ 633
           + ++Q   A  Q +PG+  R+Q     HQ
Sbjct: 205 QQQQQSQAASQQSQPGMHPRQQQQAQQHQ 233


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 239 PTEIIAFSEKADEFRKIGCEVL 304
           P E     E+AD  R++ C++L
Sbjct: 3   PLEHFENEERADRHRRVTCDLL 24


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 141 AVALNWGAGLVICR 100
           A+ ++W AG V+CR
Sbjct: 99  AITVSWKAGDVMCR 112


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 407 FIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQ 508
           FI+  + N   +  NDL + RS      L   FQ
Sbjct: 335 FILVAENNTTMVFCNDLSIDRSTNTMYVLSDNFQ 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,311
Number of Sequences: 438
Number of extensions: 3195
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)