Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0367
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 30 0.35
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 29 0.82
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 1.9
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 27 1.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.3
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 26 5.8
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 5.8
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 26 5.8
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 25 7.6
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 620 FGSSFGTNRKNSCAPWY-HLT-VYNVSPVSSAHRQPRIALEPTP 495
F S FG ++ + +P + H ++ +SP S H QP+I +P P
Sbjct: 57 FTSLFGPRKQTTSSPSFSHAAPLHPLSPPSFTHSQPQIQAQPVP 100
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 28.7 bits (61), Expect = 0.82
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 571 TI*PYTTFLLYPAPIGSRGSHWNPRPLPLER 479
T+ P TT + PAP S + RP+PL+R
Sbjct: 247 TLYPLTTEYMQPAPPNCTASPFEHRPIPLKR 277
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -1
Query: 539 SSAHRQPRIALEPTPTASGTLSWMSRRP--STLPPSQSKRAASLEV 408
+S + PR L+ TP SG+L+ +S RP ++LPP + + S V
Sbjct: 343 ASTYNPPRAPLQRTP--SGSLTPLSSRPAHTSLPPIPTVQTTSSNV 386
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 417 ARRPLTLARWKCAGSS*HPTQRSRGSGRGFQCDPRLPMGAGYRRNVV 557
A P L +WKC S H T R R + LP G + N+V
Sbjct: 442 ATLPSNLRKWKCPNHSDHVTPRYRLPEKAKVIRVGLPRGFKNKGNIV 488
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -1
Query: 605 GTNRKNSCAPWYHLTVYNVSPVSSAHRQPRIALEPTPTASGTLSWMSRRPSTLPPSQSKR 426
G N AP ++ + S + A ++P + PT S S +S PS PPS +
Sbjct: 121 GFNNNFGLAPRNYVEGMDASS-APASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAP 179
Query: 425 AASL 414
A SL
Sbjct: 180 ATSL 183
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 624 GIWKLFRYESEELLCSVVPFNRIQRFSCIQRPSAAEDRTGTHAHCLWN 481
G W E +LL S +P + +++FS +Q S TG H +W+
Sbjct: 2378 GEWMFTLTEKTKLLESFLPKDSLEKFSELQNLS-----TGLHMQAIWD 2420
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 512 ALEPTPTASGTLSWMSRRPSTLPPSQS 432
+++PTPT+S L MS +P+T PS S
Sbjct: 8 SMQPTPTSSIPLRQMS-QPTTSAPSNS 33
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -2
Query: 541 YPAPIGSRGSHWNPRPLPLER*VGCHEDPAHFHRARVRG 425
+P P+ G+ + +P E CHED + R +G
Sbjct: 402 FPRPVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAKG 440
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 562 PYTTFLLYPAPIGSRGSHWNP 500
P+T F+L+PAP+G +P
Sbjct: 445 PFTGFVLHPAPVGRAADAVDP 465
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 390 GEVATTRHVTTAS*RLWCAILTSSFIFKPTW 298
GEV + H TTAS + +++S+ + TW
Sbjct: 38 GEVQDSEHFTTASRSVKTGLISSAVVSSWTW 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,777
Number of Sequences: 5004
Number of extensions: 62525
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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