Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0367
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099...    29   2.6  
03_06_0665 - 35393088-35393590,35393935-35393977                       29   3.4  
11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672...    28   6.0  
01_05_0817 - 25466702-25467142                                         28   6.0  
02_03_0226 - 16591383-16592030,16592132-16592211,16592246-165929...    28   7.9  
01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391     28   7.9  

>01_06_1486 -
           37709159-37709377,37709558-37709821,37709903-37709995,
           37710387-37710581,37710665-37710763,37710884-37711132,
           37711264-37711467,37711543-37711602,37711731-37711913,
           37712382-37712999,37713101-37713169,37713275-37713853
          Length = 943

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = -1

Query: 551 VSPVSSAHRQPRIALEPTPTASGTLSWMSRRPSTLPPSQSKRAASLEVIL*VVEVRSRPH 372
           + P +S  R PR + + TPT +   +  SR P+   P Q+   +  E    +  V  RP 
Sbjct: 107 LGPHASRPRPPR-SQQQTPTTTAAAAADSRSPTPAAPPQTASVSQREEEKSLASVVKRPM 165

Query: 371 VMSRPLRDGSGAPSSQAPSY 312
           ++          P  +AP +
Sbjct: 166 LLDERRSLSPPPPQQRAPRF 185


>03_06_0665 - 35393088-35393590,35393935-35393977
          Length = 181

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 519 EDRTGTHAHCLWNAELDVTKTQHTSTEP 436
           EDRTG+   C W   L +   +HT   P
Sbjct: 14  EDRTGSLGFCFWGYVLSLRTKRHTDCRP 41


>11_05_0065 +
           18766566-18766576,18767023-18767083,18767170-18767268,
           18767346-18767467,18767577-18767673,18767778-18767824,
           18768020-18768203,18768349-18768400,18768795-18768985,
           18769072-18770020,18770866-18771022,18771134-18771206,
           18771292-18771465,18771880-18771993,18772110-18772236,
           18772331-18772443,18772614-18772729,18772847-18773000
          Length = 946

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 506 EPTPTASGTLSWMSRRPSTLPPSQSKR 426
           EP P+  G ++  S  P  LPP+ SKR
Sbjct: 545 EPMPSLDGIVARQSIHPDGLPPTPSKR 571


>01_05_0817 - 25466702-25467142
          Length = 146

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
 Frame = -3

Query: 618 WKLFRYESEELLCSVVPFNRIQRFSCIQRPSAAEDRTGTHAHCLWN-AELDVTKTQHTST 442
           W +F +   ELLC   PF      + +Q    A    G    C  N       K+Q T+T
Sbjct: 50  WWMFSFFLHELLCGKTPFKGSGDRAAVQHDQPAAALPGDRRRCTLNPVPTAPAKSQVTAT 109

Query: 441 E 439
           +
Sbjct: 110 Q 110


>02_03_0226 -
           16591383-16592030,16592132-16592211,16592246-16592971,
           16593060-16593192,16596839-16597518,16597604-16597666,
           16597740-16597916,16598414-16598542,16598638-16598796,
           16599057-16599224,16599418-16599519,16599812-16599857
          Length = 1036

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 554 CIRLNGTTEHRSSSDSYRKS 613
           C RLNGTT H SS+   RK+
Sbjct: 790 CGRLNGTTTHESSTPQPRKA 809


>01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391
          Length = 598

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 464 VTSNSAFQRQWAWVPVRSSAADGRWIQEKRCIRLNGTTEHRSSSDSYR 607
           + SN A    W W P  S  ADG+WI+++  + +  T+ ++   D+ R
Sbjct: 253 LASNKATLFLW-WSPSSSPLADGQWIRKEVLLPIPATS-NQDKDDATR 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,498,115
Number of Sequences: 37544
Number of extensions: 450732
Number of successful extensions: 1204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)