Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0367
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)             31   0.65 
SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_49802| Best HMM Match : IRF (HMM E-Value=0)                         28   6.0  
SB_19921| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)                   28   6.0  
SB_36014| Best HMM Match : DUF437 (HMM E-Value=6.4)                    28   8.0  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               28   8.0  

>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
          Length = 1382

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 584 CAPWYHLTVYNVSPVSSAHRQPRIALEPTPTASGTLSWMSRRPSTLPPSQSKR-AASLEV 408
           C+P   LT   V P S+A   P++A  PTPT   ++ W      T   S SKR +  LEV
Sbjct: 527 CSP--DLTTPTVLP-SAASVSPKVATTPTPTMEQSVFWPRELKFTFTFSGSKRPSIDLEV 583


>SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1099

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 211 RLRLHLNEKRHKMFRCGSL*RPACERTICPSRFKYEGACEDGAPE 345
           R+ +  N K  K   CG    P C+  + P  + Y  A +D  P+
Sbjct: 331 RVDMRANRKEGKEHVCGGYKCPVCKEVVPPDHWCYVTAGDDALPK 375


>SB_49802| Best HMM Match : IRF (HMM E-Value=0)
          Length = 253

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 490 AVGVGSSAILGCRWALDTGETLYTVKWYHGAQE 588
           A+ + S    G  W LD G  ++ V W HG+++
Sbjct: 99  AIQIESGEFTGLEW-LDKGRRVFRVPWKHGSRQ 130


>SB_19921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = -1

Query: 671 PDR-ETSTLIPV*EKTRVFGSSFGTNRKNSC-APWYHLTVYNVSPVS-SAHRQPRIALEP 501
           P R  +ST +    K  +   S GTN  + C AP+       +S  S S  RQP I LEP
Sbjct: 146 PSRTSSSTTVTCTAKITMAIYSTGTNGNSQCTAPFVTKDPLKLSVSSGSGGRQPSICLEP 205

Query: 500 TPTASGTLS---WMS 465
           T   +  L+   W+S
Sbjct: 206 TTRPNRNLTMDMWVS 220


>SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)
          Length = 490

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/83 (28%), Positives = 34/83 (40%)
 Frame = -1

Query: 551 VSPVSSAHRQPRIALEPTPTASGTLSWMSRRPSTLPPSQSKRAASLEVIL*VVEVRSRPH 372
           ++P+SS   +  I    TP    T+      P+T P     RA         V   + PH
Sbjct: 205 LNPLSSPVAKVTIKRCNTPPKKLTIKCAC--PTTQPTKSPVRAGRTAC---PVSPLTTPH 259

Query: 371 VMSRPLRDGSGAPSSQAPSYLNR 303
           + S PL  G  +P  Q+P  L R
Sbjct: 260 ISSCPLSPGVSSPKCQSPQQLLR 282


>SB_36014| Best HMM Match : DUF437 (HMM E-Value=6.4)
          Length = 240

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 558 IQRFSCIQRPSAAEDRTGTHAHCLWNAELDVTKTQHTSTEPE 433
           IQR S I   +    R   H H  +  E+ +    HT+ EPE
Sbjct: 198 IQRISQISSSNGYRARIRNHGHSCFLCEIVIRSQFHTTYEPE 239


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 24/78 (30%), Positives = 34/78 (43%)
 Frame = +3

Query: 387 HLYNLQDDFQARRPLTLARWKCAGSS*HPTQRSRGSGRGFQCDPRLPMGAGYRRNVVYG* 566
           H Y  Q+ F +  PL+   W+ A  S     R+  SG G + D  + + +GY+  V    
Sbjct: 255 HQYQPQEAFLSNTPLSDEGWRSAEES---RYRNLPSGSGRESD--MILESGYQSQVQIP- 308

Query: 567 MVPRSTGVLPIRTERASK 620
            V   T V P R E   K
Sbjct: 309 SVVHDTSVAPDRAEHDHK 326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,604,390
Number of Sequences: 59808
Number of extensions: 522222
Number of successful extensions: 1415
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)