Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0367
(677 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC151210-1|AAI51211.1| 223|Homo sapiens Unknown (protein for IM... 32 1.6
BC132747-1|AAI32748.1| 185|Homo sapiens hypothetical LOC389791 ... 32 1.6
BC132745-1|AAI32746.1| 185|Homo sapiens hypothetical LOC389791 ... 32 1.6
AK094537-1|BAC04375.1| 185|Homo sapiens protein ( Homo sapiens ... 31 2.8
AL450467-1|CAH72452.1| 173|Homo sapiens very low density lipopr... 31 5.0
AL133561-1|CAB63715.1| 580|Homo sapiens hypothetical protein pr... 30 6.6
AL117481-1|CAB55954.1| 319|Homo sapiens hypothetical protein pr... 30 6.6
AK123605-1|BAC85659.1| 143|Homo sapiens protein ( Homo sapiens ... 30 8.7
>BC151210-1|AAI51211.1| 223|Homo sapiens Unknown (protein for
IMAGE:40147417) protein.
Length = 223
Score = 32.3 bits (70), Expect = 1.6
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = -1
Query: 548 SPVSSAHRQPRIALEPTPTASGTLSWMSRRPST----LPPSQSKRAASLEVIL*VVEVRS 381
SPV +A QPR T A+GTL+ M P T + + +SLE L VVE
Sbjct: 115 SPVRAAGPQPRFTDRETEAAAGTLAHMGFAPPTSFSHFTDQELRDCSSLE-CLGVVE--G 171
Query: 380 RPHVMSRPLRDGSGAPSS 327
PHV+ L +PS+
Sbjct: 172 DPHVLCSTLSLSRPSPSA 189
>BC132747-1|AAI32748.1| 185|Homo sapiens hypothetical LOC389791
protein.
Length = 185
Score = 32.3 bits (70), Expect = 1.6
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = -1
Query: 548 SPVSSAHRQPRIALEPTPTASGTLSWMSRRPST----LPPSQSKRAASLEVIL*VVEVRS 381
SPV +A QPR T A+GTL+ M P T + + +SLE L VVE
Sbjct: 77 SPVRAAGPQPRFTDRETEAAAGTLAHMGFAPPTSFSHFTDQELRDCSSLE-CLGVVE--G 133
Query: 380 RPHVMSRPLRDGSGAPSS 327
PHV+ L +PS+
Sbjct: 134 DPHVLCSTLSLSRPSPSA 151
>BC132745-1|AAI32746.1| 185|Homo sapiens hypothetical LOC389791
protein.
Length = 185
Score = 32.3 bits (70), Expect = 1.6
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = -1
Query: 548 SPVSSAHRQPRIALEPTPTASGTLSWMSRRPST----LPPSQSKRAASLEVIL*VVEVRS 381
SPV +A QPR T A+GTL+ M P T + + +SLE L VVE
Sbjct: 77 SPVRAAGPQPRFTDRETEAAAGTLAHMGFAPPTSFSHFTDQELRDCSSLE-CLGVVE--G 133
Query: 380 RPHVMSRPLRDGSGAPSS 327
PHV+ L +PS+
Sbjct: 134 DPHVLCSTLSLSRPSPSA 151
>AK094537-1|BAC04375.1| 185|Homo sapiens protein ( Homo sapiens
cDNA FLJ37218 fis, clone BRALZ2008869. ).
Length = 185
Score = 31.5 bits (68), Expect = 2.8
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = -1
Query: 548 SPVSSAHRQPRIALEPTPTASGTLSWMSRRPST----LPPSQSKRAASLEVIL*VVEVRS 381
SPV +A QPR T A+GTL+ M P T + + SLE L VVE
Sbjct: 77 SPVRAAGPQPRFTDRETEAAAGTLAHMGFAPPTSFSHFTDQELRDCPSLE-CLGVVE--G 133
Query: 380 RPHVMSRPLRDGSGAPSS 327
PHV+ L +PS+
Sbjct: 134 DPHVLCSTLSLSRPSPSA 151
>AL450467-1|CAH72452.1| 173|Homo sapiens very low density
lipoprotein receptor protein.
Length = 173
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 280 CERTIC-PSRFKYEGA--CEDGAPEPSRSGRDMTCGRD 384
C C PSR+K +G CEDG+ E R++TC D
Sbjct: 79 CNNGQCVPSRWKCDGDPDCEDGSDESPEQCRNITCSPD 116
>AL133561-1|CAB63715.1| 580|Homo sapiens hypothetical protein
protein.
Length = 580
Score = 30.3 bits (65), Expect = 6.6
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = -1
Query: 548 SPVSSAHRQPRIALEPTPTASGTLSWMSRRPSTLPPSQSKRAASLEVIL*VVEVRSRPHV 369
SP++ PR +PT + + + ++R PS P+ + ASL + V + P
Sbjct: 272 SPMTPPRASPRTPPRASPTTTPSRASLTRTPSWASPTTTPSRASLMKMESTVSITRTP-- 329
Query: 368 MSRPLRDGSGAPSSQAPS 315
P +G PS +P+
Sbjct: 330 ---PRASPTGTPSRASPT 344
>AL117481-1|CAB55954.1| 319|Homo sapiens hypothetical protein
protein.
Length = 319
Score = 30.3 bits (65), Expect = 6.6
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = -1
Query: 548 SPVSSAHRQPRIALEPTPTASGTLSWMSRRPSTLPPSQSKRAASLEVIL*VVEVRSRPHV 369
SP++ PR +PT + + + ++R PS P+ + ASL + V + P
Sbjct: 11 SPMTPPRASPRTPPRASPTTTPSRASLTRTPSWASPTTTPSRASLMKMESTVSITRTP-- 68
Query: 368 MSRPLRDGSGAPSSQAPS 315
P +G PS +P+
Sbjct: 69 ---PRASPTGTPSRASPT 83
>AK123605-1|BAC85659.1| 143|Homo sapiens protein ( Homo sapiens
cDNA FLJ41611 fis, clone CTONG3002020. ).
Length = 143
Score = 29.9 bits (64), Expect = 8.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 272 LYKDPHRNILCLFSFKCRRNLCRLL 198
LY D H+ LF+FKCR+ LC L+
Sbjct: 57 LYCDSHKAQRFLFTFKCRKVLCCLV 81
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,954,098
Number of Sequences: 237096
Number of extensions: 2372572
Number of successful extensions: 11321
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11321
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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