Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0367
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical ...    31   1.00 
Z81529-2|CAB04298.2|  133|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z22179-2|CAA80168.1|  159|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical
           protein T10D4.6 protein.
          Length = 796

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -1

Query: 551 VSPVSSAHRQPRIALEPTPTASGTLSWMSRRPSTLPPSQSKRAASLEVIL*VVEVRSRPH 372
           V P +     P  + +P+P+ S   S M   P+T   +  +R+ S   +   V+V S P 
Sbjct: 566 VCPATETGEDPHASSDPSPSTSDLRSSMDADPATEKRATEERSESSRSLPPTVDVSSPPP 625

Query: 371 VMS 363
           V S
Sbjct: 626 VAS 628


>Z81529-2|CAB04298.2|  133|Caenorhabditis elegans Hypothetical
           protein F35E8.2 protein.
          Length = 133

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
 Frame = -3

Query: 348 RLWCAILTSSFIFKPTW-----TDCPFAC 277
           RL CA +TSS    P W     TDCP AC
Sbjct: 101 RLNCASITSSQCQSPAWRTIIATDCPSAC 129


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = -1

Query: 551  VSPVSSAHRQPRIALEPTPTASGTLSWMSRRPSTLPPSQSKRAASLEVIL*VVEVRSRPH 372
            + PV ++      +   TP+ +         P TLPP     A     IL VV V S P 
Sbjct: 2170 IGPVGTSAPVASTSTTNTPSPTNQSPVTQAPPVTLPPPSVATAGPTGPILTVVPVSSAPT 2229

Query: 371  VMSRPLRDGSGAPSSQAP 318
              +      + +P++Q+P
Sbjct: 2230 SGAVSSTTNTPSPTNQSP 2247


>Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical
           protein F14D7.2 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -1

Query: 539 SSAHRQPRIALEPTPTASGTLSWMSRRPSTLPPSQSKRAASLEVIL*VVE 390
           SSAH    I  +P  ++S       RR  + PPS S   AS    L  V+
Sbjct: 54  SSAHDDKVIKKQPETSSSSPEHRSPRRSKSAPPSSSNPPASASTFLETVK 103


>Z22179-2|CAA80168.1|  159|Caenorhabditis elegans Hypothetical
           protein F58A4.2 protein.
          Length = 159

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
 Frame = -1

Query: 560 VYNVSPVSSAHRQPRIA-----LEPTPTASGTLSWMSRRPSTLPPSQSKRAASLEVIL*V 396
           V   SP     R+ R A     L   P +   +   S +PST  P+QS  ++ +E I   
Sbjct: 69  VLGYSPFGFVERKNRAASFDFCLSDKPQSDVVVHRRSLQPSTPTPNQSAESSFIENIFDS 128

Query: 395 VEVRSRPHVM--SRPLRDGSGAP 333
              R+R H M   +    GSG+P
Sbjct: 129 PGQRNRLHSMIEEKIYEAGSGSP 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,424,609
Number of Sequences: 27780
Number of extensions: 371673
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)