Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0367
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    29   2.1  
At1g71020.1 68414.m08197 armadillo/beta-catenin repeat family pr...    29   2.8  
At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ...    29   3.7  
At4g18890.1 68417.m02785 brassinosteroid signalling positive reg...    28   4.9  
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha...    28   6.5  
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ...    28   6.5  
At5g25260.1 68418.m02994 expressed protein                             27   8.6  

>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = -1

Query: 512  ALEPTPTASGTLSWMSRRPSTLPPSQSKRAASLEVIL*VVE--VRSRPHVMSR 360
            ALE  P+A+   +++ +  S++PPSQS  + +L   L V+   +  +PH+  R
Sbjct: 2052 ALEVWPSANVKFNYLEKLLSSMPPSQSDPSTALAQGLDVMNKVLEKQPHLFIR 2104


>At1g71020.1 68414.m08197 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 628

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = +2

Query: 158 N*VIHSDSVLIGHLVICIDYVYI*TKKDTKCSGVDLCKGRHAKGQSVQVGLNMKELVRMA 337
           N +I   S  I  LV  + Y  +  KKD   +  +LC  +  KG++V+ G+ +K LV+M 
Sbjct: 458 NKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGI-VKPLVKML 516

Query: 338 HQSRHE 355
             S  E
Sbjct: 517 TDSSSE 522


>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 393

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 503 PTPTASGTLSWMSRRPSTLPP-SQSKRAAS 417
           PT T  G LS +SR PS  PP S + +AA+
Sbjct: 215 PTSTLLGNLSHLSRSPSLSPPMSPANKAAA 244


>At4g18890.1 68417.m02785 brassinosteroid signalling positive
           regulator-related contains similarity to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 284

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -1

Query: 605 GTNRKNSCAPWYHLTVYN----VSPVSSAHRQPRIALEPTPTAS 486
           GT  +  C P   + + N     SP SS    PR +  P+P++S
Sbjct: 67  GTTYRKGCKPMDRMDLMNGSTSASPCSSYQHSPRASYNPSPSSS 110


>At4g36080.1 68417.m05136 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF00454: Phosphatidylinositol 3-
            and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
          Length = 3839

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -1

Query: 512  ALEPTPTASGTLSWMSRRPSTLPPSQSKRAASLEVIL*VVE--VRSRPHV 369
            ALE  P A+   +++ +  S++PPSQS  + +L   L V+   +  +PH+
Sbjct: 2133 ALEVWPNANVKFNYLEKLLSSMPPSQSDPSTALAQGLDVMNKVLEKQPHL 2182


>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
           YT521-B-like family protein low similarity to cleavage
           and polyadenylation specificity factor 30 kDa subunit
           [Bos taurus] GI:2327052; contains Pfam profiles PF00642:
           Zinc finger C-x8-C-x5-C-x3-H type (and similar),
           PF04146: YT521-B-like family; supporting cDNA
           gi|24415581|gb|AY140901.1|
          Length = 678

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 480 RSRGSGRGFQCDPRLPMGAGYR 545
           + RG GRG    P++P+G G R
Sbjct: 485 QGRGRGRGIMWPPQMPLGRGIR 506


>At5g25260.1 68418.m02994 expressed protein
          Length = 463

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 599 NRKNSCAPWYHLTVYNVSPVSSAHRQPRIALEPTP 495
           ++K+   PW   TV++VSPV+   +   ++ E  P
Sbjct: 24  SKKSWVFPWQRCTVFDVSPVNYTFKVQAMSAEKLP 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,368,473
Number of Sequences: 28952
Number of extensions: 340461
Number of successful extensions: 810
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)