Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0366
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.3  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 232 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARK--IVGCSCV 372
           KL+  +  E    L +VD  + LGE   L   D   K +K  + GC CV
Sbjct: 564 KLIDNIKKEIYDILPEVDVEEILGEAKVLQNFDIKDKNKKVNVAGCRCV 612


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 269 HWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKIS 388
           HWSR  T  SL+N  +S  ++ +  Q  L   P  +S I+
Sbjct: 22  HWSRGNTWLSLDNSNMS--MSSVGPQSPLDMKPDTASLIN 59


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 269 HWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKIS 388
           HWSR  T  SL+N  +S  ++ +  Q  L   P  +S I+
Sbjct: 22  HWSRGNTWLSLDNSNMS--MSSVGPQSPLDMKPDTASLIN 59


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 280  P*PVESDVRCTEPEQVSCMRLHHSSQ 203
            P  VESD   ++P+Q++  R   S+Q
Sbjct: 1777 PGDVESDESESDPDQLTSSRTESSNQ 1802


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 280  P*PVESDVRCTEPEQVSCMRLHHSSQ 203
            P  VESD   ++P+Q++  R   S+Q
Sbjct: 1773 PGDVESDESESDPDQLTSSRTESSNQ 1798


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 71  PDKMGLVGTSTSTSAMVVDY 12
           PDK  L+G  T      VDY
Sbjct: 447 PDKYDLIGNGTKLIIKNVDY 466


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 139 QDHHGLKLSLAPLAV 95
           Q HHGL ++ +P +V
Sbjct: 808 QSHHGLHINSSPSSV 822


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -2

Query: 371 TQEQPTIFLALPSL 330
           T++Q T+F+A+P +
Sbjct: 67  TEQQSTVFVAIPRI 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,341
Number of Sequences: 438
Number of extensions: 2425
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)