Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0365
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 28 1.2
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 28 1.6
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 26 4.7
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 6.3
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 6.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.3
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 6.3
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 25 8.3
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 8.3
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 8.3
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 8.3
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 161 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLD 307
QR K+D+KEK + ++A V+ +E+A L+ A K + K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 505 FFQVLVPTHQFHEYLFEISHGVHILIGGEDAGVGLGRFAVHRHRTARQQ-QAASNEYIEY 329
F + PTH F +YL S LI + V + + H + + R + S +Y E+
Sbjct: 146 FMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIMAADSKHNYSSGRPSIRLQSTQYFEH 205
Query: 328 DFAIASVV 305
I ++
Sbjct: 206 GLFILDLI 213
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 577 GAHDCTVDR*RDACLHPCCWS 639
G DC VD R+ +H CW+
Sbjct: 257 GQFDCRVDLDREGPIHDVCWN 277
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 382 RHRTARQQQAASNEYIEYDFA 320
R RT +Q + +YIEYDF+
Sbjct: 43 RKRTFDEQSEITKDYIEYDFS 63
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.8 bits (54), Expect = 6.3
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Frame = +2
Query: 167 IKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGEVIFD--V 340
+ ++K+D + Y G D LV A LDA +D + + Y E I D +
Sbjct: 376 LHSKKQDILKLYSDLGINDDLVVPFCEAASSLDA----IDDLNDYIHF-TYSEQIRDRAL 430
Query: 341 LIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLE--KMFE 514
L+ GL P GS E + ++ E + ++F V R +++E +
Sbjct: 431 LMGTGLRRPQGSKYSFFEKFRKSSLYNLVKEFGMSAKDF-SFNVAQGARLRFVEDNTLSP 489
Query: 515 EEMKKVLVYLKGFDPEQRIKLAR 583
EE+ + V + PEQ ++ AR
Sbjct: 490 EELSRTYVTNELSSPEQVLQKAR 512
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 162 NGSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTTDAMAKSYSMY 341
+ S + S+ T SAT S A ++ +S+ NSTT A A S S+
Sbjct: 187 SNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSIS 246
Query: 342 S 344
S
Sbjct: 247 S 247
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 435 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 334
SSL + M V DSP ++ E G S P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 632 QHGWRHASRYRST-VQSCAPA*CAVRDRSLSSRPEPFSFPLRTFFPSTCTDASVSRIPV 459
Q+G+ ++ ST SC CAV RSL R + S + F C + +V PV
Sbjct: 548 QNGFVATTQDNSTDFASCLA--CAVVQRSLERRNQSTSAACQQCFSQYCWNGTVDNTPV 604
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +1
Query: 442 HHAKFRTGIRETDASVQVLGKNVRRGNEKGSGLLERLRSRTA 567
H+A + + ++ SV++ G ++ +EKG + ++R+ A
Sbjct: 607 HNAPKKKNLNDSLKSVELEGNGIKLSSEKGKNNVNKVRNDNA 648
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 513 SNIFSKYLYRRISFTNTCSKFRMVSISSLAE 421
S FS++ Y F NTC F + S E
Sbjct: 460 SKRFSRFYYGHYVFVNTCHNFFLTLYQSFTE 490
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -3
Query: 483 RISFTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSN 331
+ S + V S+L + +VL L P P G PA++TSN
Sbjct: 69 KASIPTNINGLSQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,155
Number of Sequences: 5004
Number of extensions: 67692
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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