Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0365
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 88 6e-18
05_01_0064 + 454786-455646,456537-456752 31 0.70
03_05_0600 + 26021863-26022469,26022562-26022992 30 1.6
11_06_0291 + 22008412-22012284 30 2.1
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 30 2.1
01_07_0339 + 42848065-42848943,42849308-42849526 30 2.1
01_06_1226 - 35518981-35519295,35519876-35520745 30 2.1
11_06_0289 - 21969248-21973516 29 2.8
11_06_0185 + 21018045-21022307 29 2.8
09_02_0332 + 7341958-7342135,7342461-7342495 29 2.8
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 29 3.7
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 29 3.7
03_01_0170 + 1389759-1391159 29 3.7
06_01_0707 + 5136210-5136584 29 4.9
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469... 29 4.9
02_04_0635 - 24646603-24647337 29 4.9
09_04_0258 - 16175258-16176069,16176111-16176414 28 6.5
12_02_0749 - 22758317-22760407 28 8.6
11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370 28 8.6
09_04_0350 + 16899076-16900164 28 8.6
05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919 28 8.6
05_03_0087 + 8286700-8288088 28 8.6
03_05_0871 + 28396964-28399843 28 8.6
01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309 28 8.6
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 88.2 bits (209), Expect = 6e-18
Identities = 55/152 (36%), Positives = 78/152 (51%)
Frame = +2
Query: 140 EKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRY 319
EKP L GQRIKTRKR+ DP F DA+VQ GDL+ K ++S S L++ RY
Sbjct: 69 EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVAKSIES--SDLNFSRY 126
Query: 320 GEVIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYL 499
G+ F+V+ GG P G++ + E + + + + K +RR +L
Sbjct: 127 GDTFFEVVFIGGRTQP-GTIKPEEEGERHPYSVLDCAAQREAILPSVLYIQKTLRRRPFL 185
Query: 500 EKMFEEEMKKVLVYLKGFDPEQRIKLARMTAL 595
K E M+K L L+ F+ +R KLA TAL
Sbjct: 186 IKNLENVMRKFLQSLEFFEENERKKLAIFTAL 217
>05_01_0064 + 454786-455646,456537-456752
Length = 358
Score = 31.5 bits (68), Expect = 0.70
Identities = 19/83 (22%), Positives = 40/83 (48%)
Frame = +2
Query: 356 LLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVL 535
L L GG+ G S + + + ED+ + ++F K + +Y+ FEE++++
Sbjct: 14 LCLCGGAACAAGRSGGEFSIVGYSEEDLASHDRLIELFEKWVAKYRKAYASFEEKVRRFE 73
Query: 536 VYLKGFDPEQRIKLARMTALWIG 604
V+ + I ++T+ W+G
Sbjct: 74 VFKDNLNHIDDIN-KKVTSYWLG 95
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3
Query: 390 PSIDTEPPGSSRPPA 346
PS+D EPPG S PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 440 DTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIGNGM 613
D+ ++F+ + K M Y Y + +E K L+YL F Q+I+ + + W+ G+
Sbjct: 794 DSQKSFDAI-AKNMLMYSYND--LPKEYKSCLLYLAIFPKGQKIRRSTLIGRWVTEGL 848
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 161 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGE 325
Q +KT R KY P+ +D G E ++ AAY+ L + Y R+GE
Sbjct: 77 QEVKTAYRTLARKYHPDMNKDP---GAEEKFKEISAAYEILSDEEKRSLYDRFGE 128
>01_07_0339 + 42848065-42848943,42849308-42849526
Length = 365
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +2
Query: 356 LLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVL 535
LLL G + P + + + ED+ + ++F K M +Y+ EE++++
Sbjct: 15 LLLLCGGACVAVAMPSELSIVGYSEEDLASHERLMELFEKFMAKYRKAYSSLEEKLRRFE 74
Query: 536 VY---LKGFDPEQRIKLARMTALWIG 604
V+ L D E + ++T W+G
Sbjct: 75 VFKDNLNHIDEENK----KITGYWLG 96
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 482 ASVSRIPVRNFAWCPYPHWRRRCRCWSWAIRRPSTPNRPAAAGR 351
A +S P F P+ RR+ RC W + + P AAG+
Sbjct: 194 AMMSGCPEVGFGEAPFAEGRRKARCLMWVSKVAAGEAAPPAAGK 237
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 449 RNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIGNGM 613
++F+ + K M Y Y + +E K L+YL F Q+I+ + + A W+ G+
Sbjct: 809 KSFDTI-AKKMFMYSYND--LPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEGL 860
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 449 RNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIGNGM 613
++F+ + K M Y Y + +E K L+YL F Q+I+ + + A W+ G+
Sbjct: 807 KSFDTI-AKKMFMYSYND--LPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEGL 858
>09_02_0332 + 7341958-7342135,7342461-7342495
Length = 70
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -3
Query: 681 VPAPGCHSADVRSPGPAARMEARIPLPIHSAVMRASLMRC 562
V AP CHS + G AR I +P HSA + A C
Sbjct: 14 VTAPRCHSVGTQETGVVARNRYAISMP-HSATLFACTPPC 52
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 188 EKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGE-VIFD 337
EK+K DP GF D V A G ++ + S+G DY YGE V+FD
Sbjct: 62 EKDKDDPEGFYDHKVAA---ADGRMEGI--FWASSGLGWDYVYYGEVVVFD 107
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 702 REHFQHEVPAPGCHSADVRSPGPAARMEARIPLPIHSAVMRASLMR 565
R+ + +V +P + RSP PA + E+R P P + RA R
Sbjct: 295 RDRVKEQVRSPKQAQSRSRSPSPARKRESRSPSPRSKRLRRAQSER 340
>03_01_0170 + 1389759-1391159
Length = 466
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = -3
Query: 681 VPAPGCHSADVRSPGP----AARMEARIPLPIHSA 589
VP GC S +RSP P AA A P P+H+A
Sbjct: 47 VPDSGCASTRLRSPAPTLPSAASSAAPQPTPLHAA 81
>06_01_0707 + 5136210-5136584
Length = 124
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 311 GSRVLIRPSLGTCRLRRDRHRPAP 240
G RVL+ PS GT LRR RP P
Sbjct: 70 GGRVLLSPS-GTSSLRRSHRRPPP 92
>02_05_0425 -
28845707-28846189,28846262-28846403,28846496-28846971,
28848817-28848848,28849429-28849572,28849770-28849841,
28850281-28850296
Length = 454
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +1
Query: 496 LGKNVRRGNE--KGSGLLERLRSRTAHQ 573
LG+ +RG E +GSGLLERL + H+
Sbjct: 23 LGRYTKRGKEDLRGSGLLERLGNACVHR 50
>02_04_0635 - 24646603-24647337
Length = 244
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = +1
Query: 322 RSHIRCTHCWRPAAAGRFGVDGRRIAQ---DQHLHLLRQ*GYGHHAKFRTGIRETDASVQ 492
RS +R T C+ P G +A +Q + G G + TG+R +
Sbjct: 105 RSRVRGTDCYEPGTTVEVNYHGVLLASGPVEQLCARATKTGRGRAVAWGTGVRLPGFVLD 164
Query: 493 VLGKNVRRGNEKGSG 537
L +VRRG + +G
Sbjct: 165 ALVSDVRRGGVEATG 179
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 323 RHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNR 210
R G+ +P G RLRR RH A P +R G R
Sbjct: 136 RGEAGAPEAEQPRGGAVRLRRLRHAAAVPPARQRHGRR 173
>12_02_0749 - 22758317-22760407
Length = 696
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 425 RRRCRCWSWAIRRPSTPNR 369
RRRCR S A RRP TP R
Sbjct: 14 RRRCRRLSGANRRPETPPR 32
>11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370
Length = 729
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 476 LMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIGNG 610
+ R Y ++K +YL F + RI R+T WI G
Sbjct: 181 MTRILNYCYSSLPADLKTCSLYLSVFPKDSRISRKRLTRRWIAEG 225
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 8.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -1
Query: 458 RNFAWCPYPHWRRRCRCWSW 399
R W + WR+R CW W
Sbjct: 245 RRRTWRQHGEWRQRSGCWQW 264
>05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919
Length = 130
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 307 LPTLWRSHIRCTHCWRPAAAGRF 375
LP + + C +C RP AAGRF
Sbjct: 89 LPAVAADLVDCMNCGRPVAAGRF 111
>05_03_0087 + 8286700-8288088
Length = 462
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 41 QVNRLSSGETAPLD*VVKGIRLIRTIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNG 214
Q++R GE +P D ++ +K KP K+DE ++Y+ NG
Sbjct: 241 QISRKKDGELSPFDSILTLAEKSAATSKRKKKSSKPKNKKNGESKEKKDEHKEYNDNG 298
>03_05_0871 + 28396964-28399843
Length = 959
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 521 MKKVLVYLKGFDPEQRIKLARMTALWIGN 607
MK +YL F E I ++++ LWIG+
Sbjct: 437 MKLCFMYLGAFKEETEISVSKLIKLWIGD 465
>01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309
Length = 330
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 451 SHGVHILIGGEDAGVGLGRFAVHRHRTARQQQAASNEYIEYDFAIASVVE 302
+HG+H+++ DA GR A + R A + S E+ + D A+ VE
Sbjct: 69 THGLHVVLTSRDA--ARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVE 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,671,286
Number of Sequences: 37544
Number of extensions: 532983
Number of successful extensions: 2021
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2017
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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