Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0365
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20) 146 2e-35
SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07) 31 1.2
SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) 29 2.9
SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) 29 2.9
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06) 29 3.8
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_13975| Best HMM Match : SGS (HMM E-Value=3.4) 29 5.0
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 5.0
SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5) 28 6.7
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_9511| Best HMM Match : DUF11 (HMM E-Value=0.097) 28 6.7
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11) 28 6.7
SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10) 28 6.7
SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3) 28 8.8
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058) 28 8.8
SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08) 28 8.8
>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
Length = 457
Score = 146 bits (353), Expect = 2e-35
Identities = 75/148 (50%), Positives = 100/148 (67%), Gaps = 6/148 (4%)
Frame = +2
Query: 188 EKEKYDPNGFRDALVQGLERA---GGDLDAAYKYLDSAGSKLDYRRYGEVIFDVLIAGGL 358
EKEK+ P GFRDA++ GL G DL+ K+LD++G KL+YR YGE +FDVL A
Sbjct: 2 EKEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKFLDTSGGKLNYRLYGEFLFDVLFAA-- 59
Query: 359 LLPGGSVSMDGESP---KTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKK 529
PGGS+ DG +P KTN CIF AN D +T+R Q+ KL+ RY+YL+K +E+EM K
Sbjct: 60 --PGGSIVEDGPNPSTYKTNICIFEANNDNETLRKHVQMHNKLICRYRYLQKSYEDEMNK 117
Query: 530 VLVYLKGFDPEQRIKLARMTALWIGNGM 613
+L++LKGF E+R KLA T + + NGM
Sbjct: 118 ILLFLKGFTDEEREKLAFTTGVVLANGM 145
>SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)
Length = 500
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 608 RYRSTVQSCAPA*CAVRDRSLSSRPEPFSFPLRTFFPSTCT---DASVSRIPVRNFAW 444
R + + S P C + RS+S P+P+ +P+ T +P T +VS+ VR + W
Sbjct: 160 RTDAEINSRCPYSCR-KYRSVSPAPQPYPYPIGTLYPYQPTPVPGVTVSQPKVRGWQW 216
>SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 298 KTRLPTLWRSHIRCTHCWRPAAAG 369
+ RLP WRS R H W+P+ G
Sbjct: 19 RDRLPFQWRSRARRNHGWKPSLKG 42
>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 517 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 410
+F H VPT QF++Y EIS + I +GG G
Sbjct: 140 VFAHIISTEVPTVQFNQYWVEISDAL-ISLGGVSQG 174
>SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
Length = 609
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 165 GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 311
G + KE +K TV T + P AIS+QPT +P D+N T
Sbjct: 40 GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90
>SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
Length = 366
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 165 GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 311
G + KE +K TV T + P AIS+QPT +P D+N T
Sbjct: 40 GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90
>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Frame = +2
Query: 158 GQRIKTRKRDEK-----EKYDPNGFRDALVQGLER 247
G++ K RK DEK +K+DP+G LV+ LER
Sbjct: 204 GEKDKGRKSDEKSEDGEKKFDPSGCDKDLVEALER 238
>SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06)
Length = 114
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 424 GEDAGVGLGRFAVHRHRTARQQQAASNEYIEYDFAIASVV 305
G AG G G F H +R R+++ EYIE ASV+
Sbjct: 69 GSSAGAGSGEF--HVYRATRRREYNRQEYIEKKSKEASVI 106
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 402 LGDSPSIDTEPPGSSRPPAMSTSNMTSP*RR*SSFDPAES 283
L D+P+ + PP S+ P A ST M+S F PA +
Sbjct: 162 LWDAPTPTSAPPASAPPKAQSTQGMSSGTSEQPWFSPANT 201
>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1318
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +2
Query: 65 ETAPLD*VVKGIRLIRTIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQG 238
E AP D ++ G R + SQ KPV++G R +RD K+ RD L+ G
Sbjct: 496 ELAPSDGMINGDRYVEDRRNFSQ--HKPVINGDRYIVDRRDFKQ--HERARRDDLING 549
>SB_13975| Best HMM Match : SGS (HMM E-Value=3.4)
Length = 473
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +2
Query: 65 ETAPLD*VVKGIRLIRTIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQG 238
E AP D ++ G R + SQ KPV++G R +RD K+ RD L+ G
Sbjct: 348 ELAPSDGMINGDRYVEDRRNFSQ--HKPVINGDRYIVDRRDFKQ--HERARRDDLING 401
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 129 VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSGP 251
V R K + RV + + R+R + LWYR WS P
Sbjct: 560 VEREKREKERVQKKLEKDKERERQREQKRKEALWYREWSRP 600
>SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5)
Length = 114
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 517 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 410
+F H VPT QF++Y EIS + I +GG G
Sbjct: 11 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 45
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 517 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 410
+F H VPT QF++Y EIS + I +GG G
Sbjct: 1227 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 1261
>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 517 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 410
+F H VPT QF++Y EIS + I +GG G
Sbjct: 133 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 167
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -3
Query: 474 FTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPA 346
+ + S+ R +++++ ++QV PSI ++PP PPA
Sbjct: 127 YQRSTSQDRHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPA 169
>SB_9511| Best HMM Match : DUF11 (HMM E-Value=0.097)
Length = 812
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = -1
Query: 638 DQQHGWRHASRYRSTVQSCAPA*CAVRDRSLSSRPEPFSFPLRTFFPSTCTD-----ASV 474
D H + + TV+ AP C+ ++P+P +F TCTD ++
Sbjct: 537 DNDHSFEVSEAGVYTVEVTAPNGCSFSGEVTFTKPDPLNFTATKAKDITCTDGIIELSTT 596
Query: 473 SRIPVRNFAWCPY 435
P+ N+A Y
Sbjct: 597 GGTPIYNYAIWSY 609
>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 517 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 410
+F H VPT QF++Y EIS + I +GG G
Sbjct: 131 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 165
>SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)
Length = 285
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 517 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 410
+F H VPT QF++Y EIS + I +GG G
Sbjct: 133 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 167
>SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)
Length = 1378
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = +1
Query: 367 GRFGVDGRRIAQDQH-----LHLLRQ*GYGHHAKFRTGIRETDASVQV-LGKNVRRGNEK 528
G GV +R +D + ++ LRQ K RT + D V + L N+ E
Sbjct: 92 GSGGVKRKRDPEDDNGKEDVVYELRQTSTKRSTKMRTDCTDYDLKVDLPLRDNLEEALED 151
Query: 529 GSGLLERLRSRTAHQAGAHD 588
G+L+R+ T H HD
Sbjct: 152 VEGVLDRVLDDTLHGVQEHD 171
>SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)
Length = 109
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 431 EDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKV 532
+DM MR Q++ K MRR + L +M ++M+++
Sbjct: 68 KDMRRMRGLHQMWAKDMRRMRSLPQMRAKDMRRM 101
>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
Length = 1187
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +2
Query: 239 LERAGGDLDAAYKYLDSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSVSMDGESPKTN 409
L+ G D +Y ++ D + + DV+ G L+ GG +S ES TN
Sbjct: 543 LDSLGSQGDPTEEYREAKDLIRDILNHKPDVVDVITKGNELIDGGKISSADESEITN 599
>SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)
Length = 409
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 284 LGTCRLRRDRHRPAPDPVPERRGNRSGHTSLSHLFFWS*S-VDPIILVF 141
L C + RDR+ P+ R + HT++ +F W S V +I ++
Sbjct: 26 LSLCAITRDRYLAVTSPLQYLRRMPNAHTAVQIVFCWVTSLVSAVITIY 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,893,142
Number of Sequences: 59808
Number of extensions: 550192
Number of successful extensions: 1734
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1728
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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