Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0365
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    29   3.4  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    29   4.4  
AL032648-6|CAC35867.1|  244|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF303259-1|AAG50217.1|  244|Caenorhabditis elegans 2O16 protein.       29   4.4  
Z99276-2|CAB16482.1|  388|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL023843-2|CAA19523.1|  388|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AC024136-5|AAF35964.4|  257|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
            protein Y54E10A.11 protein.
          Length = 1446

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 428  NEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIK-LARMT 589
            +EDMDT    E +++K     +Y+EK+FE    +    L  FD  ++ + LA +T
Sbjct: 878  SEDMDT--KIETIYLKTDTPLEYVEKVFEASQSENSFPLFQFDQSKKYEWLANLT 930


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 447 MVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSNMTSP 319
           +VS SS      V+    +PS    P  +S  P  STSN T+P
Sbjct: 466 VVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSNPTTP 508


>AL032648-6|CAC35867.1|  244|Caenorhabditis elegans Hypothetical
           protein Y54G9A.7 protein.
          Length = 244

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 449 RNFEQVFVKLMR--RYKYL--EKMFEEEMKKVLVYLKGFDPEQRIK 574
           R +++ F K  +  R K L  E+ F++ MK +L  L+ F+PE+ +K
Sbjct: 127 RRYDRDFFKYQKYHREKKLKSEREFQKRMKSLLTELEAFNPEKYVK 172


>AF303259-1|AAG50217.1|  244|Caenorhabditis elegans 2O16 protein.
          Length = 244

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 449 RNFEQVFVKLMR--RYKYL--EKMFEEEMKKVLVYLKGFDPEQRIK 574
           R +++ F K  +  R K L  E+ F++ MK +L  L+ F+PE+ +K
Sbjct: 127 RRYDRDFFKYQKYHREKKLKSEREFQKRMKSLLTELEAFNPEKYVK 172


>Z99276-2|CAB16482.1|  388|Caenorhabditis elegans Hypothetical
           protein Y52D3.1a protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/66 (19%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
 Frame = +2

Query: 434 DMDTMRNFEQVFVKLMRR-YKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARM-TALWIGN 607
           DM ++++ +++ + +  R  ++L + F +EM + +     +DP+QR   + + ++ W+G+
Sbjct: 278 DMISLKDDQKMGLDISHRPQEHLTRRFSKEMHEFIANCLDYDPQQRGSASDLKSSAWLGS 337

Query: 608 GMRASI 625
            +  ++
Sbjct: 338 KIHKNL 343


>AL023843-2|CAA19523.1|  388|Caenorhabditis elegans Hypothetical
           protein Y52D3.1a protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/66 (19%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
 Frame = +2

Query: 434 DMDTMRNFEQVFVKLMRR-YKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARM-TALWIGN 607
           DM ++++ +++ + +  R  ++L + F +EM + +     +DP+QR   + + ++ W+G+
Sbjct: 278 DMISLKDDQKMGLDISHRPQEHLTRRFSKEMHEFIANCLDYDPQQRGSASDLKSSAWLGS 337

Query: 608 GMRASI 625
            +  ++
Sbjct: 338 KIHKNL 343


>Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical
           protein T19B10.5 protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 159 VNGSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTTDAMAK 326
           V+ S  +KEMR   + R+ + T    V   P+   + PTS  T P + ++TD+  K
Sbjct: 324 VSDSDDDKEMRYHPLFRSNTLT---HVHFNPLGTISTPTSIATTPQRCTSTDSKQK 376


>AC024136-5|AAF35964.4|  257|Caenorhabditis elegans Hypothetical
           protein F54A3.2 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 607 VTDPQCSHARQLDAL--FGIEAFQVDQNLFHFLFEHFFQVLVPTHQF 473
           V D   S   Q D +  FGI + +  + L HFL+ +F +   P  QF
Sbjct: 171 VADTTTSERLQKDLIDWFGIPSPESKKTLLHFLYAYFCRQCTPDIQF 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,435,180
Number of Sequences: 27780
Number of extensions: 399311
Number of successful extensions: 1376
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)