Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0365
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.1  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   6.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   6.7  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   6.7  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   6.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   6.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 87  LLKASVSLEQYIV*VRR*KNQYYRVNGSRPEKEM 188
           LL A   LEQY   +RR  ++ +R+     +KE+
Sbjct: 66  LLHAKDFLEQYFSSIRRLNSEAHRIRWESVQKEV 99


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 260 LDAAYKYLDSAGSKLDYRRYGEVIFDVLI 346
           +D  Y  LDS    ++   YG  + DV++
Sbjct: 163 MDLHYYPLDSQNCTVEIESYGYTVLDVVM 191


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 125 MSQKVEKPVLSGQRIKT 175
           M QK+EKPVLS     T
Sbjct: 314 MLQKLEKPVLSSSTTTT 330


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 641 QDQQHGWRHASRYRSTVQSCA 579
           + + HG++H S + S  +SC+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCS 238


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 641 QDQQHGWRHASRYRSTVQSCA 579
           + + HG++H S + S  +SC+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCS 238


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 641 QDQQHGWRHASRYRSTVQSCA 579
           + + HG++H S + S  +SC+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCS 238


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 641 QDQQHGWRHASRYRSTVQSCA 579
           + + HG++H S + S  +SC+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCS 238


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 641 QDQQHGWRHASRYRSTVQSCA 579
           + + HG++H S + S  +SC+
Sbjct: 207 RSRTHGFQHTSSHYSRERSCS 227


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 641 QDQQHGWRHASRYRSTVQSCA 579
           + + HG++H S + S  +SC+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCS 238


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = +2

Query: 122 CMSQKVEKPVLSGQRIKTRKRDEKE 196
           C++  +++  +  +R +T++RD+ E
Sbjct: 170 CLAMGMKREAVQEERQRTKERDQSE 194


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = +2

Query: 122 CMSQKVEKPVLSGQRIKTRKRDEKE 196
           C++  +++  +  +R +T++RD+ E
Sbjct: 170 CLAMGMKREAVQEERQRTKERDQSE 194


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/44 (20%), Positives = 20/44 (45%)
 Frame = +2

Query: 125  MSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGG 256
            +  ++++P+   Q  +     ++E+Y     + AL Q     GG
Sbjct: 1640 LGDRMQRPMKESQENQQNAETQRERYYATIHKVALQQAANTGGG 1683


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/44 (20%), Positives = 20/44 (45%)
 Frame = +2

Query: 125  MSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGG 256
            +  ++++P+   Q  +     ++E+Y     + AL Q     GG
Sbjct: 1636 LGDRMQRPMKESQENQQNAETQRERYYATIHKVALQQAANTGGG 1679


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/44 (18%), Positives = 23/44 (52%)
 Frame = -1

Query: 710 LMIANTSSTKSQRQVVIQQMFVHQDQQHGWRHASRYRSTVQSCA 579
           +++ N   ++++ +         +++ HG++H S   S  +SC+
Sbjct: 184 VLVVNIEKSENESKKYATSSNSLRNRTHGFQHTSSRYSRERSCS 227


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 127 ESEGRKTSIIGSTD 168
           ESE R+ S +GST+
Sbjct: 371 ESENRRNSCLGSTE 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,110
Number of Sequences: 438
Number of extensions: 5319
Number of successful extensions: 29
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)