Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0364
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0UA19 Cluster: ATP/GTP-binding site motif A; n=10; Bur...    33   5.0  
UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_A0AMD6 Cluster: Complete genome; n=1; Listeria welshime...    33   8.7  

>UniRef50_A0UA19 Cluster: ATP/GTP-binding site motif A; n=10;
           Burkholderia|Rep: ATP/GTP-binding site motif A -
           Burkholderia cenocepacia MC0-3
          Length = 383

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
 Frame = -2

Query: 299 PQPDTVRDTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNL 120
           PQ D V DT++ +PD +   +L R+  PL A       D AV           L E    
Sbjct: 10  PQTDRVADTMSVLPDDASVTELMRSFAPLLA-------DEAVTELVINRPQRILTETHRG 62

Query: 119 WHAHKLNK--YQRIKGIFCFFFSIFNLETNEE*P 24
           W AH L +  ++R+        ++ N   + E P
Sbjct: 63  WQAHDLPELDFERLMAFAVAIATLTNQSVSTEHP 96


>UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 932

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = -2

Query: 236 LFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNLWHAHKLNK 96
           +FR +NP K  N  DA DSA G S   + + S P+  NL    K+NK
Sbjct: 164 IFRFVNPRK--NEGDAGDSARGPSCYNSHVVSSPQNYNLSEIKKMNK 208


>UniRef50_A0AMD6 Cluster: Complete genome; n=1; Listeria welshimeri
           serovar 6b str. SLCC5334|Rep: Complete genome - Listeria
           welshimeri serovar 6b (strain ATCC 35897 / DSM 20650
           /SLCC5334)
          Length = 42

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = -3

Query: 487 KFSVMTILKLMRSRKPTNIFLKKTIIFD 404
           K S++  +KL++S+K TN+ LK+ II+D
Sbjct: 14  KRSILPYIKLLKSKKVTNLHLKERIIYD 41


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,957,055
Number of Sequences: 1657284
Number of extensions: 10238813
Number of successful extensions: 23640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23637
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)