Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0362
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   6.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.6  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   8.8  

>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 80  LITATPDLKIGGGKNLNQVVGFSEHSVVLLGE 175
           ++  TPD  +GG K+L Q V   E+  +LLG+
Sbjct: 503 VLMLTPD--VGGTKSLEQYVNGWENRTLLLGD 532


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 209  GTLQKTDDSCVNFVEGTGGYVFSSTNFEKLNAPQQKQFIQTAANTITHKLLS 364
            G L   D    + +E +   + S  N    N P+ KQ+I    N +  KL++
Sbjct: 3721 GLLDSYDCYLSSLLETSNAKISSRPNVLMPNQPEVKQYIPNVWNDVLKKLIT 3772


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 7    MLPARRNRVSHLRCDLQEHGGYDIADHGHTRPQDWRWKE 123
            +L A  N +S+L  DL  H  + I  +  + PQDW W E
Sbjct: 1341 LLSADPNSLSNLDQDLPNHLQHLIPIY--SLPQDWLWCE 1377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,457
Number of Sequences: 5004
Number of extensions: 36558
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)