Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0362
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0004 + 20021394-20023430                                         33   0.18 
02_01_0405 - 2952434-2955583                                           32   0.42 
05_05_0112 - 22480639-22480905,22480991-22481287,22481707-224818...    27   9.0  
05_03_0024 - 7459352-7459765                                           27   9.0  
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    27   9.0  

>09_05_0004 + 20021394-20023430
          Length = 678

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = -2

Query: 351 CVIVLAAVWMNCFCCGAFNFSKLVDEKT*PPVPSTKFTHESSVF---WSVPLKVSESLVC 181
           C+ +   +WM+   C       LVD     P PST F     V    W+   +V+ SL+ 
Sbjct: 240 CLALFNQMWMSGLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLIS 299

Query: 180 FFSPSSTTECSL 145
           F++  S  +C++
Sbjct: 300 FYTKFSLLDCAV 311


>02_01_0405 - 2952434-2955583
          Length = 1049

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 146 SEHSVVLLGEKKQTKDSETLRGTLQKTDDSCVNFVEGTGGY 268
           SEH +V+L + K+ +D  T  G ++ T++     + G GGY
Sbjct: 740 SEHLLVMLQQGKEAEDKITFTGIMEATNNFNREHIIGCGGY 780


>05_05_0112 -
           22480639-22480905,22480991-22481287,22481707-22481836,
           22482167-22482492,22482609-22482830,22483372-22483684,
           22483795-22483850
          Length = 536

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 107 IGGGKNLNQVVGFSEHSVVLLGEKKQTKDSETLRGTL-QKTDDSCVNFVEG 256
           +GGG+NLN  +  S +  VL G    +    T+   + Q+T D  V+  EG
Sbjct: 50  LGGGENLNDPLKESNNGPVLQGFNGSSASFRTVGAKITQETGDFFVSDAEG 100


>05_03_0024 - 7459352-7459765
          Length = 137

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 355 APQRAAVSALYLHLRGSV 408
           AP+RAA SAL LH+ G V
Sbjct: 20  APRRAATSALRLHITGDV 37


>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 315 FCCGAFNFSKLVDEK 271
           FCCGA +FS+L+ EK
Sbjct: 379 FCCGANDFSRLMKEK 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,343,259
Number of Sequences: 37544
Number of extensions: 265334
Number of successful extensions: 651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)