Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0362
(619 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_45896| Best HMM Match : ApoC-I (HMM E-Value=4) 29 3.0
SB_27235| Best HMM Match : ApoC-I (HMM E-Value=4) 29 3.0
SB_21999| Best HMM Match : ApoC-I (HMM E-Value=4) 29 3.0
SB_31678| Best HMM Match : ApoC-I (HMM E-Value=4) 29 3.0
SB_7314| Best HMM Match : ApoC-I (HMM E-Value=3.6) 29 3.0
SB_44773| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05) 27 9.2
>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 32.7 bits (71), Expect = 0.25
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +2
Query: 20 DAIESAIYDVIFKNMAVTTSLITATPDLKIGGGKNLNQVVGFSEHSVVLLGEKKQTKDSE 199
D +E +YD + +S++ LKI GK G + S V L E K + S+
Sbjct: 689 DILELGLYDAVCHFNLGYSSVLRLLEALKIPAGKYTEAGCGLEDTSRVRLAEYKSKEASK 748
Query: 200 T----LRGTLQKTDD 232
T LRG +K DD
Sbjct: 749 TRRKVLRGKRKKKDD 763
>SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +2
Query: 20 DAIESAIYDVIFKNMAVTTSLITATPDLKIGGGKNLNQVVGFSEHSVVLLGEKKQTKDS- 196
D +E ++YD + +S++ LKI GK G + S V L E K + S
Sbjct: 506 DILELSLYDAVCHFNMGYSSVLRLLEALKIPAGKYTEAGCGLEDTSRVWLAEYKSKEASK 565
Query: 197 ---ETLRGTLQKTDD 232
+ LRG +K +D
Sbjct: 566 RRRKVLRGKRKKKED 580
>SB_45896| Best HMM Match : ApoC-I (HMM E-Value=4)
Length = 104
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +2
Query: 20 DAIESAIYDVIFKNMAVTTSLITATPDLKIGGGKNLNQVVGFSEHSVVLLGEKKQTKDS- 196
D +E +YD + +S++ LKI GK G + S V L E K + S
Sbjct: 15 DILELGLYDAVCHFNMGYSSVLRLLEALKIPAGKYTEAGCGLEDTSRVRLAEYKSKEASK 74
Query: 197 ---ETLRGTLQKTDD 232
+ LRG +K +D
Sbjct: 75 RRRKVLRGKRKKKED 89
>SB_27235| Best HMM Match : ApoC-I (HMM E-Value=4)
Length = 158
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +2
Query: 20 DAIESAIYDVIFKNMAVTTSLITATPDLKIGGGKNLNQVVGFSEHSVVLLGEKKQTKDS- 196
D +E +YD + +S++ LKI GK G + S V L E K + S
Sbjct: 69 DILELGLYDAVCHFNMGYSSVLRLLEALKIPAGKYTEAGCGLEDTSRVRLAEYKSKEASK 128
Query: 197 ---ETLRGTLQKTDD 232
+ LRG +K +D
Sbjct: 129 RRRKVLRGKRKKKED 143
>SB_21999| Best HMM Match : ApoC-I (HMM E-Value=4)
Length = 104
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +2
Query: 20 DAIESAIYDVIFKNMAVTTSLITATPDLKIGGGKNLNQVVGFSEHSVVLLGEKKQTKDS- 196
D +E +YD + +S++ LKI GK G + S V L E K + S
Sbjct: 15 DILELGLYDAVCHFNMGYSSVLRLLEALKIPAGKYTEAGCGLEDTSRVRLAEYKSKEASK 74
Query: 197 ---ETLRGTLQKTDD 232
+ LRG +K +D
Sbjct: 75 RRRKVLRGKRKKKED 89
>SB_31678| Best HMM Match : ApoC-I (HMM E-Value=4)
Length = 298
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +2
Query: 20 DAIESAIYDVIFKNMAVTTSLITATPDLKIGGGKNLNQVVGFSEHSVVLLGEKKQTKDS- 196
D +E +YD + +S++ LKI GK G + S V L E K + S
Sbjct: 209 DILELGLYDAVCHFNMGYSSVLRLLEALKIPAGKYTEAGCGLEDTSRVRLAEYKSKEASK 268
Query: 197 ---ETLRGTLQKTDD 232
+ LRG +K +D
Sbjct: 269 RRRKVLRGKRKKKED 283
>SB_7314| Best HMM Match : ApoC-I (HMM E-Value=3.6)
Length = 281
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +2
Query: 20 DAIESAIYDVIFKNMAVTTSLITATPDLKIGGGKNLNQVVGFSEHSVVLLGEKKQTKDS- 196
D +E +YD + +S++ LKI GK G + S V L E K + S
Sbjct: 104 DILELGLYDAVCHFNMGYSSVLRLLEALKIPAGKYTEAGCGLEDTSRVQLAEYKSKEASK 163
Query: 197 ---ETLRGTLQKTDD 232
+ LRG +K +D
Sbjct: 164 RRRKVLRGKRKKKED 178
>SB_44773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +2
Query: 20 DAIESAIYDVIFKNMAVTTSLITATPDLKIGGGKNLNQVVGFSEHSVVLLGEKKQTKDS- 196
D +E +YD + +S++ LKI GK G S V L E K + S
Sbjct: 15 DILELGLYDAVCHFNMGYSSVLRLLEALKIPAGKYTEAGCGLDNTSRVRLAEYKSKEASK 74
Query: 197 ---ETLRGTLQKTDD 232
+ LRG +K +D
Sbjct: 75 RRRKVLRGKRKKKED 89
>SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05)
Length = 897
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 199 NFERNAPED*RFMREL-C*RHRRL-RFLVDQLREVECATAEAVHPDGR 336
NF R+ P+ R+ R + RH++ + L+ +++ CA E + P+G+
Sbjct: 243 NFVRSTPKIERYKRVVVAIRHKKQQKLLLKVFKDIRCANLEHLLPEGK 290
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,113,948
Number of Sequences: 59808
Number of extensions: 293844
Number of successful extensions: 680
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -