Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0362
(619 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U62892-1|AAC47284.1| 3351|Drosophila melanogaster retinoid- and ... 51 1e-06
BT025088-1|ABE73259.1| 1074|Drosophila melanogaster IP14091p pro... 51 1e-06
AE014135-185|AAF59387.2| 3351|Drosophila melanogaster CG11064-PA... 51 1e-06
AF049658-1|AAC05595.1| 335|Drosophila melanogaster geranylgeran... 32 0.71
DQ812095-1|ABH10625.1| 96|Drosophila melanogaster SnoA protein. 29 3.8
BT009937-1|AAQ22406.1| 1872|Drosophila melanogaster SD06328p pro... 28 8.8
AE014297-4082|AAN14398.1| 439|Drosophila melanogaster CG31065-P... 28 8.8
AE013599-3254|AAF46751.2| 1831|Drosophila melanogaster CG30263-P... 28 8.8
>U62892-1|AAC47284.1| 3351|Drosophila melanogaster retinoid- and fatty
acid-bindingglycoprotein protein.
Length = 3351
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/100 (28%), Positives = 48/100 (48%)
Frame = +2
Query: 131 QVVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCVNFVEGTGGYVFSSTNFEKLNAPQ 310
+++GF+ V + K K R LQ +D ++FV GG+VF++ NFEKL A
Sbjct: 3242 KLIGFNSRLVATVDGKDSKK-----RTKLQFDNDMGIDFVLNNGGWVFATQNFEKLKASD 3296
Query: 311 QKQFIQTAANTITHKLLSEQLSQLCTCTYVDPFRVRSVCV 430
QK+ + +++ L ++ C C + + CV
Sbjct: 3297 QKKMLNQITSSLADTLFKTEIVSDCRCLPIHGLHGQHKCV 3336
>BT025088-1|ABE73259.1| 1074|Drosophila melanogaster IP14091p protein.
Length = 1074
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/100 (28%), Positives = 48/100 (48%)
Frame = +2
Query: 131 QVVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCVNFVEGTGGYVFSSTNFEKLNAPQ 310
+++GF+ V + K K R LQ +D ++FV GG+VF++ NFEKL A
Sbjct: 965 KLIGFNSRLVATVDGKDSKK-----RTKLQFDNDMGIDFVLNNGGWVFATQNFEKLKASD 1019
Query: 311 QKQFIQTAANTITHKLLSEQLSQLCTCTYVDPFRVRSVCV 430
QK+ + +++ L ++ C C + + CV
Sbjct: 1020 QKKMLNQITSSLADTLFKTEIVSDCRCLPIHGLHGQHKCV 1059
>AE014135-185|AAF59387.2| 3351|Drosophila melanogaster CG11064-PA
protein.
Length = 3351
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/100 (28%), Positives = 48/100 (48%)
Frame = +2
Query: 131 QVVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCVNFVEGTGGYVFSSTNFEKLNAPQ 310
+++GF+ V + K K R LQ +D ++FV GG+VF++ NFEKL A
Sbjct: 3242 KLIGFNSRLVATVDGKDSKK-----RTKLQFDNDMGIDFVLNNGGWVFATQNFEKLKASD 3296
Query: 311 QKQFIQTAANTITHKLLSEQLSQLCTCTYVDPFRVRSVCV 430
QK+ + +++ L ++ C C + + CV
Sbjct: 3297 QKKMLNQITSSLADTLFKTEIVSDCRCLPIHGLHGQHKCV 3336
>AF049658-1|AAC05595.1| 335|Drosophila melanogaster geranylgeranyl
pyrophosphate synthaseprotein.
Length = 335
Score = 31.9 bits (69), Expect = 0.71
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +2
Query: 161 VLLGEKKQTKDSETLRGTLQKTDDS-----CVNFVEGTGGYVFSSTNFEKLNAPQQKQFI 325
V+ + Q +D + LR + Q+T D C+ +E G + ++ E L+A + +
Sbjct: 226 VIHAVRTQKQDKQVLRKSSQRTHDIEVKKYCITLLEKLGSFQYTRKVLESLDAEARSEVS 285
Query: 326 QTAANTITHKLLSEQLS 376
+N +LL++ LS
Sbjct: 286 TLGSNPYMDRLLNKLLS 302
>DQ812095-1|ABH10625.1| 96|Drosophila melanogaster SnoA protein.
Length = 96
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +1
Query: 262 RLRFLVDQLREVECATAEAVHPDGRQHDHAQAPQRAAVSALYLHL 396
+ + ++DQL+EVE + +H R+ +H + R + A+Y+H+
Sbjct: 3 KYQIILDQLKEVEL---KEMHKAQRELEHKKRKVRTNIYAIYIHI 44
>BT009937-1|AAQ22406.1| 1872|Drosophila melanogaster SD06328p protein.
Length = 1872
Score = 28.3 bits (60), Expect = 8.8
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
Frame = +2
Query: 26 IESAIYDVIFKNMAVTTSL-ITATPDLKIGGGKNLNQVVGFSEHSVVLLGEKKQTKDSET 202
+ +A+ + AVT+ + + +TP K GG N++++V S +L + + +
Sbjct: 1217 VGNAVLQAVEAVPAVTSEVTVPSTPGGKGAGGANMSKLVRMSSRMSLLSNKSTKVRSDSP 1276
Query: 203 LRGTLQKTDDSCVNFVEGTGGYVFSSTNFEKLNAPQQKQFIQTAANTIT------HKLLS 364
+ + E G +N + ++ ++ T+T HK +S
Sbjct: 1277 QNRKVATVQEHATEKEETVGASSQPMSNDAAAILEKSQKTLENIQKTVTEATDEIHKTIS 1336
Query: 365 EQLSQL 382
E L+ L
Sbjct: 1337 ENLTDL 1342
>AE014297-4082|AAN14398.1| 439|Drosophila melanogaster CG31065-PA
protein.
Length = 439
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 327 WMNCFCCGAFNFSKLVDEKT*PPVPSTKFTHESSVFW 217
W+ F G + +++D+ T S+ FTH +S +W
Sbjct: 402 WVKRFFLGTVQYLQILDQSTFFSQGSSMFTHVTSSYW 438
>AE013599-3254|AAF46751.2| 1831|Drosophila melanogaster CG30263-PA
protein.
Length = 1831
Score = 28.3 bits (60), Expect = 8.8
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
Frame = +2
Query: 26 IESAIYDVIFKNMAVTTSL-ITATPDLKIGGGKNLNQVVGFSEHSVVLLGEKKQTKDSET 202
+ +A+ + AVT+ + + +TP K GG N++++V S +L + + +
Sbjct: 1215 VGNAVLQAVEAVPAVTSEVTVPSTPGGKGAGGANMSKLVRMSSRMSLLSNKSTKVRSDSP 1274
Query: 203 LRGTLQKTDDSCVNFVEGTGGYVFSSTNFEKLNAPQQKQFIQTAANTIT------HKLLS 364
+ + E G +N + ++ ++ T+T HK +S
Sbjct: 1275 QNRKVATVQEHATEKEETVGASSQPMSNDAAAILEKSQKTLENIQKTVTEATDEIHKTIS 1334
Query: 365 EQLSQL 382
E L+ L
Sbjct: 1335 ENLTDL 1340
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,481,566
Number of Sequences: 53049
Number of extensions: 433730
Number of successful extensions: 1117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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