Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0362
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81049-4|CAJ76935.1| 496|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z81049-3|CAB02846.2| 631|Caenorhabditis elegans Hypothetical pr... 31 0.87
U97003-6|AAB52273.1| 402|Caenorhabditis elegans Hypothetical pr... 29 2.0
AL031633-10|CAA21024.1| 387|Caenorhabditis elegans Hypothetical... 28 4.6
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 8.1
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 8.1
AF040648-7|AAK26140.1| 386|Caenorhabditis elegans Lethal protei... 27 8.1
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 8.1
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 8.1
>Z81049-4|CAJ76935.1| 496|Caenorhabditis elegans Hypothetical
protein C48D1.1b protein.
Length = 496
Score = 30.7 bits (66), Expect = 0.87
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = +2
Query: 119 KNLNQVVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDS---CVNFVEGTGGYVFSSTNF 289
+N+N++V E SV G+K +TK SE T++ T+ S C N ++ G S +
Sbjct: 346 ENVNRLVDILEWSV---GQKNETKLSEFFEITIKMTEKSSKACTNMIQ-AGIISISLSCM 401
Query: 290 EKLNAPQQKQFIQTAANTITHKLLSEQLSQLCTCTYVD 403
EK+ + ++ L + L +L T + VD
Sbjct: 402 EKVESNDITTKCLELLTNLSSALNYDSLQELYTSSNVD 439
>Z81049-3|CAB02846.2| 631|Caenorhabditis elegans Hypothetical
protein C48D1.1a protein.
Length = 631
Score = 30.7 bits (66), Expect = 0.87
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = +2
Query: 119 KNLNQVVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDS---CVNFVEGTGGYVFSSTNF 289
+N+N++V E SV G+K +TK SE T++ T+ S C N ++ G S +
Sbjct: 481 ENVNRLVDILEWSV---GQKNETKLSEFFEITIKMTEKSSKACTNMIQ-AGIISISLSCM 536
Query: 290 EKLNAPQQKQFIQTAANTITHKLLSEQLSQLCTCTYVD 403
EK+ + ++ L + L +L T + VD
Sbjct: 537 EKVESNDITTKCLELLTNLSSALNYDSLQELYTSSNVD 574
>U97003-6|AAB52273.1| 402|Caenorhabditis elegans Hypothetical
protein F47C10.8 protein.
Length = 402
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = -1
Query: 226 SLLERSSQSFRIFS---LFLLAKQHDGMLTESNDLIQILSTSNLE--VGCGRDQRCRNRH 62
SLL+R++ + FS L L K D + E L LSTSN CGRD C N
Sbjct: 25 SLLKRANPALFFFSFCSLISLFKMED--IDELPSLAMELSTSNAPKCTICGRDASCHNYG 82
Query: 61 VL 56
VL
Sbjct: 83 VL 84
>AL031633-10|CAA21024.1| 387|Caenorhabditis elegans Hypothetical
protein Y39A1A.13 protein.
Length = 387
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 260 GGYVFSSTNFEKLNAPQQKQFIQTAANTITH 352
G +VF + +KL PQQ++F+ T + TH
Sbjct: 101 GYFVFLVRDADKLITPQQQKFLYTMVDKATH 131
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 68 VTTSLITATPDLKIGGGKNLNQ--VVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCV 241
VT SLI+ D + G ++ Q V GF E + +GE+ + +DS L+ +L + +
Sbjct: 4077 VTPSLISRL-DEQYAGQEDFKQGYVDGFKEGASSRVGERSRFEDSRKLQQSLTELTERLT 4135
Query: 242 NFVEGTGGYVFSSTNFEKLN 301
+ + G + S+ + N
Sbjct: 4136 SLEKTKGDEIHSTKIYHVYN 4155
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 68 VTTSLITATPDLKIGGGKNLNQ--VVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCV 241
VT SLI+ D + G ++ Q V GF E + +GE+ + +DS L+ +L + +
Sbjct: 4074 VTPSLISRL-DEQYAGQEDFKQGYVDGFKEGASSRVGERSRFEDSRKLQQSLTELTERLT 4132
Query: 242 NFVEGTGGYVFSSTNFEKLN 301
+ + G + S+ + N
Sbjct: 4133 SLEKTKGDEIHSTKIYHVYN 4152
>AF040648-7|AAK26140.1| 386|Caenorhabditis elegans Lethal protein
805, isoform c protein.
Length = 386
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 68 VTTSLITATPDLKIGGGKNLNQ--VVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCV 241
VT SLI+ D + G ++ Q V GF E + +GE+ + +DS L+ +L + +
Sbjct: 183 VTPSLISRL-DEQYAGQEDFKQGYVDGFKEGASSRVGERSRFEDSRKLQQSLTELTERLT 241
Query: 242 NFVEGTGGYVFSSTNFEKLN 301
+ + G + S+ + N
Sbjct: 242 SLEKTKGDEIHSTKIYHVYN 261
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 68 VTTSLITATPDLKIGGGKNLNQ--VVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCV 241
VT SLI+ D + G ++ Q V GF E + +GE+ + +DS L+ +L + +
Sbjct: 4074 VTPSLISRL-DEQYAGQEDFKQGYVDGFKEGASSRVGERSRFEDSRKLQQSLTELTERLT 4132
Query: 242 NFVEGTGGYVFSSTNFEKLN 301
+ + G + S+ + N
Sbjct: 4133 SLEKTKGDEIHSTKIYHVYN 4152
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 68 VTTSLITATPDLKIGGGKNLNQ--VVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCV 241
VT SLI+ D + G ++ Q V GF E + +GE+ + +DS L+ +L + +
Sbjct: 4077 VTPSLISRL-DEQYAGQEDFKQGYVDGFKEGASSRVGERSRFEDSRKLQQSLTELTERLT 4135
Query: 242 NFVEGTGGYVFSSTNFEKLN 301
+ + G + S+ + N
Sbjct: 4136 SLEKTKGDEIHSTKIYHVYN 4155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,764,994
Number of Sequences: 27780
Number of extensions: 216479
Number of successful extensions: 596
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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