Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0361
         (702 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    25   0.60 
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   7.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.7  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   9.7  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 596 NIDTISENVFYLPEVQDG 649
           N+  ISEN +YLP +  G
Sbjct: 57  NVSEISENFYYLPAMSTG 74


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 639 YKMGLYLVKICH 674
           YK+G +L +ICH
Sbjct: 104 YKIGYWLHQICH 115


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 533 PDQLRQIKETSLARILCDNGDNIDTISENVF 625
           P+   QI +      L D G  +  ISE V+
Sbjct: 88  PEIKIQISQQQSVTALLDTGSEVSCISEEVW 118


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 317 DLSGEISDKEVRDKLQELYGSVHNIDVWVGGILED 421
           D+ G I +  +    +  YG  HN+   + G + D
Sbjct: 341 DVLGNIIESSILSPNRNYYGDFHNMGHILIGYIHD 375


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,098
Number of Sequences: 336
Number of extensions: 3663
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)